si:ch73-40a2.1 (LOC108267785)


Basic Information

Item Value
gene id si:ch73-40a2.1
gene name LOC108267785
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20637228 ~ 20649186 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935854.2
ctttttttaaatgtgctgtatgagtgggaaaaaaatccgGTTATAAAATCTCCAATGACTCCATGCCACAGTCTGAGATCCTCTGCCTTTAGTGGTTAAACGGAGTCTTAAATGCTATGTCAGGTCATAACAGGAAACTCAAGCGGAGAGGAAGATGTTAAAACTGTACAGGAGTACTACAGCTTGAGGTTCTGTAGAAGTGAAAGCTCTTGAGTAGGCTATAGCAGTTCAATGAACTCTTCTGCGTCAGTTGACATTTAAAGTACTGATTGAACTCCAGTGCTGTACATGAATGTCCGCATTCAGCACCCAGAAGGACAGAACTATGTCACCCTTCGAGTTGGTCGAGCTGTAAAGGCTGTGGGCGCGTGCTGGCGCGCGCGTGCgcgtgagtgtgagtgtgagagagagagagagagagagatcagagtgGTGTGTAGAGGAGAGAAGCTCAGTGTACAGGTGAGAATGAGGTAGTAGTGTGTTATATAGTAGTGCACAGGTTGTGTTTTTCTGATGGAGATGGCTGTCGTGCTCTGTTTGCTGTTACGTTACTGCGTGTTTGCGGTGACATTCTTGGGCACGTCTTCCCAACTGACCCCGATTAAAGAGGACATTTTGGACTCTACCACAGAGACAAATCTCCAGTGGATATCAGAACCACCCAAAGCTtGGGAAGAGATTAAATTAAAGCTGGGACTGGCCTCGGCCCACACTGTCTACCAAGGCTGTCATTCAAAActtaaaaacacactaaaaacaTTGTGGACTAAATGGATTGCGAAGAAGGACGCCCATGAGCTTCAGCTGGACCTGCTTTTTGCTCAAGATGACCAAATACCTCTCGCTATTCTGTTACTGGAGTCTGATACACCAGTGGAACATCCTCACCCTGGACAAAAGAGGCAGGAGATTGTAGCCCCACAGGCATTTATTCAGTCTGCTGGACTTCAGGACGTGGAGACACACCTGTTTCATGCGCAGGGTCTAGACTTGGGAAAGATCACAAGAAATGGCTTTCATTTGGGTTTCTCCTACAGTGGATCATGCATGTTTATTTCCTCCGTGCGGGTCTTCTACATGAAATGCCCAGGGCTGACAGTGAACCAGACTAGTTTTAGAGGAGCGTCAGCGGGGTCAGGGTGGATCAGAGGCCAGTGTGTGGATGGAGCTGAAGAAGTGTCTACCCCAAAGATTAAGTGTGAGTCTAATGGACAGTGGAGTGTAATGCAAGGATTCTGTGTCTGTGGAGCTGGTTATCAAACCGAAGGGAACGTGTGTAAAGctTGTGGTTTGGGCAGCTACAAAGCTGCCAGTGATAGTGGAGAATGTCAGCTTTGCCCATTCAACAGCAGAACATCCTCAGAAGGTGCTTCAGAGTGTGACTGTGAAGAGGGATATGCCCGACTGCAGGATGACCCACCGCAACTAGGCTGTACAAgaTCTCCATCGGCACCGCTCAACTTAACTGTCCATCACTTGAGTAACACGGCCCTGATTCTGAACTGGGCCACGCCTGCAGACCTGGGTGGAAGACGGGAAGTGATGTATGATGTAGAATGTAGACAAAACACAGGAGAATCTCATGCTGCATGGGTTGCATGTGACAATACCATGTTAATAACACCAAAGTCCACGGGACTGACTGAAACAGTGGCCAACATTACTGGATTACAACCACATGTGAGCTACCAGATTTCTGTCAGAGCATACAACAGAATATCTCAGAAACTGGGTACATCTGGGGCTGCACAGTCCATTACTATATTGAAGACTCCAGTAgtaatcaccactgttcctgtACCAACACCTGCTGCCCAGGAAGAGCTCAAAACTCCAGTGATTGCCAGTGTGCTGTGTGGAATACTGCTACTCCTGGCTCTGATACCAGCTGCCTTCTGCCTTATACGCAGAGGTTATAGTAAATTCAGAGAAGATCATGAAGGGGAGCTTGTGCCTTTAGAGAATGTTGGTAGAGTATACAGATGCCCTGAAGAACCACAAACTACACCTCCTCAACAAACTACCAGTTCTGTTCCGATTTTCGACAGCGTGAATGAAAGACTGCTGTCTGGTATTAAAGACGTGTTGGTAGATCGCAGCCGAGTCACGCTGGGCAAAGAGCTCGGGAAAGGAGAATTTGGGGCAGTTTATGAGGGCATATTCTTATCAGACGACAATGTGAACATCCAAGTGGCAGTGAAGACCATGAAAGTTGGAATTTACAGCCAGGACGATCTGCAGTCATTTCTTAAGGAAGCTGAAATTATGCAGCACTTTGACCATGATAACATAGTGAAACTTCTAGGTGTCACACTGGAGACAGCACAGGACTTGTCCATCCCTGTTCCACTTGTCATCCTACCATTCTTGAAACATGGAGACCTGAGACGATTTCTTATAGCCACCCGCTATGGTGACATTCCTATGTTCGTGCCACATCAGTGCCTGCTACGCTTTATGATTGACATTGCCTCAGGCATGGAATATCTCAGCTCCAAGGGCTTTTTGCATAGAGATTTGGCAGCACGCAACTGCATGCTGGGAGATGATCTGCATGTACGTGTGGCTGACTTCGGCCTGTCCAAGCAGATCTTCAGCAGTAACTATTACAGACAGAAGGTTGCTATCCGAATGCCAGTCAAGTGGATGGCCATAGAGAGCCTTTCTGATTCCATCTACACTATCAAGAGTGATGTGTGGTCCTTTGGAGTGACCATGTGGGAGATTGTGTCCAGAGGAAGGACTCCATATCCCAGCATCCCCAACCATGAGATTTTGGAACTGCTGGAGCGCGGACATCGCCTCAAACAGGGGGACTGTGACAGTAAACTATATGAGGTGATGCTAAGCTGCTGGCACAAAGAACCCTCTCAGCGGCCTTGTTTTGCAGAGCTGGCTCAGACACTCAAAGCTCTACTGTGTGAGCTTCCGCCCTTGGAGCCCAGTAAAGAGAACTACTACATCAACCAGGGCCTGGAGGCAGCCAACGCCACCCAGAGCAGTGCTGCAGAGTCTGGCCCTGAGGGAGCTGTAGGAAACATTTACTTGCCCTCGCCACTGCACAAAACAGACTGCtaaaaaagaagtgaagaagaCACAGAAGAAGGATAGCTGTTCTGCAAAAAAGTGTCATGCAGACTGTCAAAAAAAGGAGGCACAAAATCTTGCTGTACTGTACATAGTGTTATGTTTGTACACTGATGTCTATCTGTTTATGCTGTGTATCCAATGCTGTGGATGTTTATGCTGtgtatccatttttttttatgaattatgtaACCAACATTTTCCTAAATAGCTGATACATCTTTCTAAAGTTCAGTGTGCACGCTTTCTATTTATTGCCTACAGTATTTTTAATTCAGACATTAAAGATTGGTCTGAACATGTGTCTAAACATGACACTTATCAACACCATAAA

Function

NR:

description
tyrosine-protein kinase receptor TYRO3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935854.2 True 3424 mRNA 0.47 15 20637228 20649186

Neighbor

gene id symbol gene type direction distance location
ehbp1l1a LOC108267830 coding upstream 6242 20587612 ~ 20630986 (+)
LOC113539982 LOC108267206,LOC108440832 coding upstream 55216 20579774 ~ 20582012 (+)
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding upstream 59747 20570371 ~ 20577481 (+)
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding upstream 67175 20567906 ~ 20570053 (+)
mta2 mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444 coding upstream 71811 20549680 ~ 20565417 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007 coding downstream 3389 20652575 ~ 20660555 (+)
rce1a rce1,rce1a,LOC107683501,LOC107731886,LOC107679240,LOC107710076 coding downstream 33522 20682708 ~ 20692222 (+)
cd248a LOC108268330 coding downstream 86641 20735827 ~ 20739174 (+)
LOC113540687 LOC108267189 coding downstream 194158 20843344 ~ 20846978 (+)
pde5ab pde5a,pde5ab coding downstream 203558 20852744 ~ 20893531 (+)
G68054 NA non-coding upstream 1663 20635348 ~ 20635565 (+)
G67958 LOC108267586 non-coding upstream 155473 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 361553 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 671340 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 720059 19916600 ~ 19917169 (+)
G68070 NA non-coding downstream 43077 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 215692 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 539345 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 556559 21205745 ~ 21209324 (+)
G68313 NA non-coding downstream 584839 21234025 ~ 21234258 (+)
fcer1g LOC100305060 other upstream 482451 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 570008 19990684 ~ 20067220 (+)
G66864 NA other upstream 1778576 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2428664 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2493597 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 371072 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 665032 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 979890 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1103230 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2000624 22649810 ~ 22652447 (+)

Expression


Co-expression Network