ctdnep1b (ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382)


Basic Information

Item Value
gene id ctdnep1b
gene name ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18000158 ~ 18010962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935856.2
GTCTAAACAAACCTCTTCACTTCTTGCTTTGGGTTCTTTCCcagcttatttttcttttgatattgctttgtgctttctgttgTCTTATTGCAAGACATCACATGTCATGTTCTCGGAAATTAGGCCTAACTGTTTGTAGAAAAGTCGTTAAACAGAAgtacactttctttctttttatatccAAAACCTTTGCGCTGAACTGCACATTAGTGACATTCCACGTCAGTGAAAAGTAAAACTGATGACACACATCCTGAATTTGAACGTCCTGTCAGGGAATATCAAACCCTGGCACTTTGTAACCTTCTGGGGATGTTAACCGTCTGTCTGCCATGTCTTTGTGCTCTGTTTTGTTGTCGACGCGTTTGTTTTAACGAGAAAACCAAAGGCGAGGTGAAGTTTGGGGTCTTTGCGGAAGTGACGGCGTAGTTCCGGGTTTGGTTTGAACTGTCTCTCAGCACTGACTCTTTATTAACTGAGCTGCACCCTTCAGCGGTGAGGAGGGAAAACACTGCATTCAGCGCCACGGCGGTTGGATTATTTGTGCTCTGCTTGTGGACTGGACCTCATGTCACCTCCACAAGTCATCAGCCGGTTCACATAGCCACACCGCTAGCTAGCTggatttgtttggtttggtttggctAATTGAGCTGGACACTATTTAAACCCCTAGCTGCTTCGTTCACTACAAACACATGCACTTTTAGTTCCTggggttttctttctttctttttttacaccGGTTTTCAGCAATGAGAGCCTTCGGAAAgaaaactgactgactgatgtTCACAGACTCTTCTGGAAACTCCAAGCTGTAAATGATAGTGCGGATCTCCTAAGGTTTCAGCTAGCGGACAGAGAAGTGATTTATACGGTGTTATGGTTGACATGCTAAAGACTCGTCAGTGTCTGCTGTGTGTCCGCACTTTCTTTAGCGTGACGTCCAAGTTATggagtttatttttgtatatccTCAGGAAACCGCTAAGAACGATAATCCAATATCAGACGGTGCGATATGACACTTTACCCTTGTCACCGTTGTCTAGAACCAGACTCAATTCAGTAAAGCGGAAGATTCTGGTTTTAGACCTCGATGAGACATTGATTCATTCACATCATGATGGGGTTCTGAGACCATCGGTACGGCCTGGCACTCCTCCGGACTTTATCCTTAAAgttGTTATAGACAAGCATCCAGTCAGATTCTTTGTGCACAAAAGGCCCCATGTGGATTTCTTCTTGGAGGTGGTCAGTCAGTGGTACGAGCTCGTAGTGTTCACTGCTAGCATGGAAATCTACGGCTCTGCAGTAGCAGACAAGCTGGACAACAACAAAGGCATCCTGAAGCGCAGATACTACAGACAGCATTGCACGCTGGATCTGGGTAGTTACATAAAAGACCTGTCTATCATACATAGTGATCTTTCTAGTATAGCAATTCTTGACAACTCGCCTGCGGCATATCGCAGTCATCCAGATAATGCAATACCTATAAAATCATGGTTCAGTGATCCCAGTGATACAGCACTTCTTAACCTTCTGCCAATGCTGGATGCACTAAGATTCACAGCTGATGTTCGGTCCGTCCTTAGCCGAAACCTGCACCAGCATCAACTTTGGTGATCGTCCCACTGAGAGACATTGAGTTTTTAACTTCTTTCCATGCAGACTCTGTCCCTCTTTCGTACAACACCAGCACAAGTGTGATCAGGTGAAGGTCCAAACTGAACTTGCTTGAAGGAAGTTAAAAAACATTGGGAACATGTTGACCCTTGGTGTCCTTTCCATCTTCAGACTGGAGTCCCTGTCTTGAATTTCTTCTGCAATACTGTGGGAGGACTGCACACAAACCCAGGAGCACAGGGACAGAGCCCTGAAGGGACAGTTTTATTTGCACAGTGCCATGGTTTTAATACGACAGACATTAGATTATTCTGCATTTCTCAGGTTATTGGCAATGGACAGTGTTCTTCCGTGTTCTTCCATTGACGTGAGTATGTggatgaggaaaaaacaaagagcagTAATTTGGAGTCCTTGTTTCTACtcacctttctttctcttgagtGAAGTCTTTGTAGCCACCAGCTTGGAAAAGTGAGTGTCAACGGGTGTTTTTTAAGGGCAACAAGAATCCGTTTTTTTAACTCTTGACCTCTTGACAGTGCTTAATGGATGAGCATTGagacaaaaattattttaaacaaaatgtctaATTTGGACTCAGAAATAAGTGGCCCATCTAGGTGTCCTATAAACAAGTTTCTTGGTCCTTGTAACAACACTTTATATTTTGTGATGTTTAATGTAAGGATTATTTTTTGACACAGACCCCAGGAGTCCATCTATATTAGGGGGAAATTGAATGTTATTAGGCTGTTGTTAAGGTGCCTTCTTAAAAGACAGGAGTTTTATGGTTAATGGTTTATGTATTAACAGACAATTTTAAGTTGGCAGTTTTATATGACAGATATGTAGAATGTTTTCCCCAGCCTGCTCTTTAGCAAATCTATAAATATTTCATGACTCAtcacttttattcttcttaacAGTATAGGAGTCTGGTACAGACTTCAGAAGCAAATTATGTGCCATTTTCTTCACACGCATTTATTAAGACATGCAAGGAATGAATGTTGCGTTGTAAGTCTGTATAAGTGTACTGAACAGTTGGCTAAGCAACTGCCactattttgattttgtttttatgtttaccCGTTCCATAGTAAATGATATTCTGCTCAAGTCTCAGGGCAGCTCCCTTGGACTCCAGTCCtgagatgaataaaacacatgacaGTGTGAa
>XR_003403977.2
GTCTAAACAAACCTCTTCACTTCTTGCTTTGGGTTCTTTCCcagcttatttttcttttgatattgctttgtgctttctgttgTCTTATTGCAAGACATCACATGTCATGTTCTCGGAAATTAGGCCTAACTGTTTGTAGAAAAGTCGTTAAACAGAAgtacactttctttctttttatatccAAAACCTTTGCGCTGAACTGCACATTAGTGACATTCCACGTCAGTGAAAAGTAAAACTGATGACACACATCCTGAATTTGAACGTCCTGTCAGGGAATATCAAACCCTGGCACTTTGTAACCTTCTGGGGATGTTAACCGTCTGTCTGCCATGTCTTTGTGCTCTGTTTTGTTGTCGACGCGTTTGTTTTAACGAGAAAACCAAAGGCGAGGTGAAGTTTGGGGTCTTTGCGGAAGTGACGGCGTAGTTCCGGGTTTGGTTTGAACTGTCTCTCAGCACTGACTCTTTATTAACTGAGCTGCACCCTTCAGCGGTGAGGAGGGAAAACACTGCATTCAGCGCCACGGCGGTTGGATTATTTGTGCTCTGCTTGTGGACTGGACCTCATGTCACCTCCACAAGTCATCAGCCGGTTCACATAGCCACACCGCTAGCTAGCTggatttgtttggtttggtttggctAATTGAGCTGGACACTATTTAAACCCCTAGCTGCTTCGTTCACTACAAACACATGCACTTTTAGTTCCTggggttttctttctttctttttttacaccGGTTTTCAGCAATGAGAGCCTTCGGAAAgaaaactgactgactgatgtTCACAGACTCTTCTGGAAACTCCAAGCTGTAAATGATAGTGCGGATCTCCTAAGGTTTCAGCTAGCGGACAGAGAAGTGATTTATACGGTGTTATGGTTGACATGCTAAAGACTCGTCAGTGTCTGCTGTGTGTCCGCACTTTCTTTAGCGTGACGTCCAAGTTATggagtttatttttgtatatccTCAGGAAACCGCTAAGAACGATAATCCAATATCAGACGGTGCGATATGACACTTTACCCTTGTCACCGTTGTCTAGAACCAGACTCAATTCAGTAAAGCGGAAGATTCTGGTTTTAGACCTCGATGAGACATTGATTCATTCACATCATGATGGGGTTCTGAGACCATCGGTACGGCCTGGCACTCCTCCGGACTTTATCCTTAAAgttGTTATAGACAAGCATCCAGTCAGATTCTTTGTGCACAAAAGGCCCCATGTGGATTTCTTCTTGGAGGTGGTCAGTCAGTGGTACGAGCTCGTAGTGTTCACTGCTAGCATGGAAATCTACGGCTCTGCAGTAGCAGACAAGCTGGACAACAACAAAGGCATCCTGAAGCGCAGATACTACAGACAGCATTGCACGCTGGATCTGGGTAGTTACATAAAAGACCTGTCTATCATACATAGTGATCTTTCTAGTATAGCAATTCTTGACAACTCGCCTGCGGCATATCGCAGTCATCCAGATAATGCAATACCTATAAAATCATGGTTCAGTGATCCCAGTGATACAGCACTTCTTAACCTTCTGCCAATGCTGGATGCACTAAGATTCACAGCTGATGTTCGGTCCGTCCTTAGCCGAAACCTGCACCAGCATCAACTTTGGTGATCGTCCCACTGAGAGACATTGAGTTTTTAACTTCTTTCCATGCAGACTCTGTCCCTCTTTCGTACAACACCAGCACAAGTGTGATCAGACTGGAGTCCCTGTCTTGAATTTCTTCTGCAATACTGTGGGAGGACTGCACACAAACCCAGGAGCACAGGGACAGAGCCCTGAAGGGACAGTTTTATTTGCACAGTGCCATGGTTTTAATACGACAGACATTAGATTATTCTGCATTTCTCAGGTTATTGGCAATGGACAGTGTTCTTCCGTGTTCTTCCATTGACGTGAGTATGTggatgaggaaaaaacaaagagcagTAATTTGGAGTCCTTGTTTCTACtcacctttctttctcttgagtGAAGTCTTTGTAGCCACCAGCTTGGAAAAGTGAGTGTCAACGGGTGTTTTTTAAGGGCAACAAGAATCCGTTTTTTTAACTCTTGACCTCTTGACAGTGCTTAATGGATGAGCATTGagacaaaaattattttaaacaaaatgtctaATTTGGACTCAGAAATAAGTGGCCCATCTAGGTGTCCTATAAACAAGTTTCTTGGTCCTTGTAACAACACTTTATATTTTGTGATGTTTAATGTAAGGATTATTTTTTGACACAGACCCCAGGAGTCCATCTATATTAGGGGGAAATTGAATGTTATTAGGCTGTTGTTAAGGTGCCTTCTTAAAAGACAGGAGTTTTATGGTTAATGGTTTATGTATTAACAGACAATTTTAAGTTGGCAGTTTTATATGACAGATATGTAGAATGTTTTCCCCAGCCTGCTCTTTAGCAAATCTATAAATATTTCATGACTCAtcacttttattcttcttaacAGTATAGGAGTCTGGTACAGACTTCAGAAGCAAATTATGTGCCATTTTCTTCACACGCATTTATTAAGACATGCAAGGAATGAATGTTGCGTTGTAAGTCTGTATAAGTGTACTGAACAGTTGGCTAAGCAACTGCCactattttgattttgtttttatgtttaccCGTTCCATAGTAAATGATATTCTGCTCAAGTCTCAGGGCAGCTCCCTTGGACTCCAGTCCtgagatgaataaaacacatgacaGTGTGAa

Function

symbol description
ctdnep1b Predicted to enable protein serine/threonine phosphatase activity. Acts upstream of or within head development. Predicted to be located in endoplasmic reticulum membrane and nuclear membrane. Predicted to be part of Nem1-Spo7 phosphatase complex. Orthologous to human CTDNEP1 (CTD nuclear envelope phosphatase 1).
ctdnep1a Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in nuclear envelope organization; positive regulation of triglyceride biosynthetic process; and protein dephosphorylation. Predicted to be located in endoplasmic reticulum membrane and nuclear membrane. Predicted to be part of Nem1-Spo7 phosphatase complex. Orthologous to human CTDNEP1 (CTD nuclear envelope phosphatase 1).
ctdnep1 Enables protein serine/threonine phosphatase activity. Involved in several processes, including positive regulation of triglyceride biosynthetic process; protein dephosphorylation; and protein localization to nucleus. Located in endoplasmic reticulum membrane; lipid droplet; and nuclear membrane. Part of Nem1-Spo7 phosphatase complex.

NR:

description
CTD nuclear envelope phosphatase 1

GO:

id name namespace
GO:0006998 nuclear envelope organization biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0010867 positive regulation of triglyceride biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0071595 Nem1-Spo7 phosphatase complex cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17617 CTDNEP1, DULLARD, NEM1; CTD nuclear envelope phosphatase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935856.2 True 2815 mRNA 0.42 7 18000158 18010962
XR_003403977.2 False 2732 misc_RNA 0.42 8 18000158 18010962

Neighbor

gene id symbol gene type direction distance location
elp5 elp5 coding upstream 1942 17992640 ~ 17998216 (+)
LOC113540162 LOC108268287 coding upstream 31847 17966324 ~ 17968311 (+)
tnk1 tnk1 coding upstream 49770 17936846 ~ 17950388 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding upstream 100665 17894900 ~ 17899493 (+)
LOC113539925 NA coding upstream 106197 17889483 ~ 17893961 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 4167 18015129 ~ 18019079 (+)
spata6l spata6l coding downstream 9249 18020211 ~ 18028051 (+)
rap1gds1 rap1gds1,LOC107552992 coding downstream 38327 18049289 ~ 18082430 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 210662 18221624 ~ 18243797 (+)
gba3 LOC108267130,LOC108437095 coding downstream 415396 18426358 ~ 18430359 (+)
G66237 NA non-coding upstream 7911 17990435 ~ 17992247 (+)
G66186 NA non-coding upstream 24799 17973998 ~ 17975359 (+)
G66169 NA non-coding upstream 81061 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 123084 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 224849 17772553 ~ 17775309 (+)
G66263 NA non-coding downstream 80626 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 100723 18111685 ~ 18111915 (+)
G66452 NA non-coding downstream 166272 18177234 ~ 18177642 (+)
G66637 NA non-coding downstream 370994 18381956 ~ 18382162 (+)
G66654 NA non-coding downstream 419600 18430562 ~ 18431136 (+)
LOC113539940 NA other upstream 380079 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 598770 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1629201 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1680992 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1960174 16023194 ~ 16039984 (+)
frem1a frem1 other downstream 102471 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 186350 18197312 ~ 18208564 (+)
G66864 NA other downstream 845494 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1979722 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 2136833 20147795 ~ 20154777 (+)

Expression


Co-expression Network