elp5 (elp5)



Basic Information


Item Value
gene id elp5
gene name elp5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17992640 ~ 17998216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026935857.2
CTGTCTtgtgatgtaaatgtgtattaaaGTGAGAAAGAAGAAGCAGTGGAGCCATGTTGTGTCTCTCGCGCAGTCTCATGTCTATGACGTGAACACACGAAGCTCCAGCACATCAGGGGGCGACATGCACAATACAGTCGCATATTAAAGAGTCCGAGTGTAAGCGAAGAACCCGCATGTCGTTAATCAACACATTGATGATTATTTTGGACCAGATGCCGCAGAGGTTCAGGTTTTAGTGCTTAAGCCTGTGTGTAGCTGTAGGACCAGAGCAGCAGGTTAAAGCTTGGTGGACTGTGTAACCGGTACATCAGTGGAGTCTTTTACCTGTCAGGCTGCACGCGCAGGAGCGCTCACAATGCTGTCTGAGGGGCTACAGGCAACAGAACCGGGAGGATTCCTTCTTATTCGAGACACTGCTTGTTATTCTGGACGACGCCTGCTTAAGTATTACATAAACTGCGCCTTAAAGAGaggGGAAGCTGTCCATGTGTTGGGGTTTGAAATTCCTGAGCATGAGTTGTGTGCCGAACTGGACAGAAATTACCTGCATTTGTTTCACTATCACAATGCATACACCGACCCGCTGGGCTGGACCAAGCAGTCCTCGTTCACAGTGAAGCATTTCAGTGCAACAGAAATGACACGGCTACTTCAGGAGACACAACAGGCCAAAGCTTCAGTACTTGTCATTGACTCTTTGTCTTGGGTTGTAAGACATCATGACACTGTTGCCGTCTGTCAAGAACTTCAGAAGCTCAGGAAAGGAGGCTCTGTAAGGCTGATCTTTGGTCTCCTACACACGGATCTTCATCAGCAAGGCGTTGTTGGAACTGTAAGCCACTTAGCCAGCACTGTAATTTCTGTTACACCTGTGAACAATGCACGCTATGCTGTGGCCAAGATATCACACCGTAAAAAATCTGGGAAGGTTATGCAGAAGgaggaGTTTTTCACTTTAACAGAGGACTTGACACTGTCAATAGAGACTAAACCCAACCAATCTGGAAATGTTGAAACAGACTTGCACACGAAGTCTGAGGTGGATCCAGCGTCAAATTTGACCTTTAATCTTCGTTTGTCTGAGGTTGAAAGAGAGGCAAAGGAAAAAGTTCCTCTACCCTTTGTCTTCAGTGAAGAAAAAAAGTCTGCTCTCCTGAGGCCAGGCCGAGGTTCTGGACGCATTATGTATGAACCTGATGCCAATGATGACATTGATGAAGAAGACCCAGATGATGACCTTGATGTCTAAAAGGTCCCTTTCGAACATTGTTAGAAGCTCTGATGGTTCTCTGGAGCCTGAGCtccaatattttaaataaaaaaattctgtacTTAGGCCAGTTTAAACATGTGGCCTAAACATCATGCTATGGTAAGGATGAGACTTTTGGAAGTACAATACCAGCAATATTGCACATTATAGTGTCTGTTTTTGATCTTCTATACTGTCTGTTCAAAGGGACTGGTTTGTCATTGTAAATGACTGCATCCCAAATCACGTACAAGCATACAACATAGTGTGCTGAAATATTACACCCTTTATGGAACAGATAACTGACAGCGATGTATATTtttgacatactatttagtgtGTAGCAACTCTTATGCAGCTAGCACCACAAGACAAAGTGGcctttaaaaacaatgttttgtttttaaacatatagACAACCCCATGTGCAAAGACAGTGATGCACTTCTCAGCTGCCTTAAGCCCAAGCATGTCcagacaaaataattttatttatttattttttttgcaagtatACAGTGATTTGTGCTCAGAAGGGGACATCTCTTTCGTCAAATGGGAGATTTTGCGTATGATCTGTATCTAGCTAGTTTATCACAGTTTAGTTGTCTGTTATGAGTACCCCCTAATGAATTGGCGTCTAGGCTTCACATGAAATCTAATTTGCTGAAAGGCTGTGTACCTTTTGTGAAAAAGGGCACTAAAACTTTTAACCACAGTTAGAGTTATTATTGATTACTAactgataaagcagttactgaaaaagaTGAATAAACCCTTATAAATGATTAGAATGAAAATAACTACACaaattttgactgtggcatatAAAACAAGTTGCATAATTAGAACAAACATAAGCAGTTACCTATTTAACCTTTTCATTTTGGTTGTAATGGGATTAAGATATTCACACACTATACTGGGTAAAATATAGTGGAGTTTGTTGTGAAGGTAATTATCATAAGCAACAAAATCACAGAATATCTATGTAtaataacaaagaaaattatttataaatatgctCTCCCACGTTTGtgagtggaatttttttttttttttttgtatactaCTACATAAATTTTATTCAGTAATTCTTTCATACAtttggcctcatttatcaatcttgtAATAAAGTTGTAAAATGA

Function


symbol description
elp5 Predicted to contribute to tRNA binding activity. Predicted to be involved in positive regulation of cell migration and tRNA modification. Predicted to act upstream of or within tRNA wobble uridine modification. Predicted to be located in cytoplasm. Predicted to be part of elongator holoenzyme complex. Predicted to be active in cytosol and nucleus. Orthologous to human ELP5 (elongator acetyltransferase complex subunit 5).

NR:

description
elongator complex protein 5

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005634 nucleus cellular_component
GO:0033588 elongator holoenzyme complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11376 ELP5, IKI1; elongator complex protein 5

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026935857.2 True 2403 mRNA 0.40 8 17992640 17998216

Neighbor


gene id symbol gene type direction distance location
LOC113540162 LOC108268287 coding upstream 24329 17966324 ~ 17968311 (+)
tnk1 tnk1 coding upstream 42252 17936846 ~ 17950388 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding upstream 93147 17894900 ~ 17899493 (+)
LOC113539925 NA coding upstream 98679 17889483 ~ 17893961 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 166114 17784990 ~ 17826526 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 16913 18015129 ~ 18019079 (+)
spata6l spata6l coding downstream 21995 18020211 ~ 18028051 (+)
rap1gds1 rap1gds1,LOC107552992 coding downstream 51073 18049289 ~ 18082430 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 223408 18221624 ~ 18243797 (+)
gba3 LOC108267130,LOC108437095 coding downstream 428142 18426358 ~ 18430359 (+)
G66237 NA non-coding upstream 393 17990435 ~ 17992247 (+)
G66186 NA non-coding upstream 17281 17973998 ~ 17975359 (+)
G66169 NA non-coding upstream 73543 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 115566 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 217331 17772553 ~ 17775309 (+)
G66263 NA non-coding downstream 93372 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 113469 18111685 ~ 18111915 (+)
G66452 NA non-coding downstream 179018 18177234 ~ 18177642 (+)
G66637 NA non-coding downstream 383740 18381956 ~ 18382162 (+)
G66654 NA non-coding downstream 432346 18430562 ~ 18431136 (+)
LOC113539940 NA other upstream 372561 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 591252 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1621683 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1673474 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1952656 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1942 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 115217 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 199096 18197312 ~ 18208564 (+)
G66864 NA other downstream 858240 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1992468 19990684 ~ 20067220 (+)

Expression



Co-expression Network