peli3 (LOC108267165,LOC108440836,LOC107731914,LOC102800049,LOC103027529,LOC100695529)


Basic Information

Item Value
gene id peli3
gene name LOC108267165,LOC108440836,LOC107731914,LOC102800049,LOC103027529,LOC100695529
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20661726 ~ 20677144 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935869.2
ATCTGTAGCATGTAAGGCGGGGCTTAAACCGAGTCACGGCGTTCTAACCGAGCCAACACACCCACTCTGTAGGCGACGGAGAAACACCTTGTCTGTGGTATTTCTTGGAAGGGGAACGCATAGGAGGGATGGGCGTGTCAAGTGAATGTCGTGTCCGGAGCGAAATTCCTCTGTCGGATTAACATTACCCTCACCGTGTACCGTAATGACCCCGGTGTCTCTGTGTGGCGATGAGCGCGTCGTCCACATCATCGTAGCGCGAGgacctcagcagcagcagcagcgccaCGCGCCCTTCTGATGCCACGCGCGGATTCAAGCAGCCATCAGGACTGACGACGCAAACATCAGCGGctgCGAGTCCCTTCACGTGGCCCTTAGACATGGTTTTAGAAGGAAGCTCTGAGGCCCTGTGCCCTCCTCCGTCCCTGGAGCTGCGCCCATCATGCAACAAGAGCCAACCGTCGCCCCCTCTAGACTCTGGCTCACAATCCCATGATGCCATATTCCCTGGGGACAAGGAGCCTATCAAGTATGGAGAGCTGATCGTGCTGGGACATAATGGTTCACTAGTGGGTGGTGATAAAGGGCGCAGGAGGAGTCGACTAGCTCTTTACAAGAGACCCAAAGCCAACGGCGTCAAACCTGATGTCATCCACAATGTATCCACACCTCTGGTGTCAAAGgcacTGAGCAACAAAAGCCAGCACAGTATCTCCTACACACTGTCAAGGAGTCATTCTGTTATAGTAGAGTACACACATGACTCCAACACAGATATGTTTCAGATTGGCCGTTCCACAGAGAGCATGATTGACTTTGTGGTGACGGATATGGCGGGCAGCAGCGGGCAGTGCCAAGGTCAGAGTCAGGGGGGTGCGGGTGGAGACGGGGGCCAGTCAGCACAGAGCACCATCTCTCGCTATGCTTGCCGCATCATGTGTGAGCGTAGTGCCCCCTACACAGCCCGCATCTATGCTGCTGGCTTCGACTCCTCCAAAAACATCTTCCTCGGGGAGCGGGCAGCTAAATGGCGGACCTCAGACGGCTTGATGGATGGGCTGACTACCAATGGGGTGTTAGTGATGCACCCTGCGGGGGAATTTGTGTCTGAGCCCACTCCTGGGGTGTGGCGGGAGATATCAGTGTGCGGGAACGTCTTCGCCCTGAGAGAGACACGCTCGGCTCAACAGAGAGGCAAACTGGTCGAGAATGAGTCAAACACACTGCAGGACGGCTCTCTGATTGACCTGTGTGGCGCCACGCTGCTGTGGCGGAGCCCGAGTGGCCTGCGGCGCACGCCTACGCTCAAGCAGCTCGAGTCACTGCGCCAGGAGCTGAATGCTGCACGTCCTCAGTGTCCGGTGGGCTTCAACACGCTAGCCTTCCCCAGCCTGGCGCAGCGTGCCACCGTCGACAAGAAGCAGCCATGGGTCTACATGAACTGCGGTCACGTGCACGGCTACCACAACTGGGGCTTCCGCAGGGAGAAGGATAAGGCAGTGGGGGCAGCTGAGCGCGAGTGCCCCATGTGCAGGAAGGTGGGCCCCTACGTGCCCCTGTGGCTGGGCTGCGAGGGTGGCCTATATCTGGACGCAGGGCCCCCGACACACGCTTTCTGCCCCTGCGGCCACGTGTGCTCAGAGAAAACAGCGCAAGGCTGGAGTCAGATCCCACTGCCGCACGGAACACACGCCTTCCACGCAGCATGCCCATTCTGTGGCACCTGGCTCACTGGCCAGCACGGCCACGTCAAGCTCATCTTCCAAGGCCCCGTTGACTGAGACAGCAGGACTGCATGTGAAAGAAAAGGACTAAAGGACTCGAGGAGTAAATGTATCGGACTGTTACTGCACCAAGATGATGTTGAGagaatatgtaaataaaggTGATGGAATAAAAAGGAAA
>XM_034303290.1
AGGGTTCATAAGTCTGATTGCATGTGGAAAGAAGCATTTTCAGTGTTTAGTGGATTTGATCTGAAGCTGCTGCTGGAGAGAAGGAGTTCAAATATGCGGTGGTCTTGGTGCAAGGGctgCGAGTCCCTTCACGTGGCCCTTAGACATGGTTTTAGAAGGAAGCTCTGAGGCCCTGTGCCCTCCTCCGTCCCTGGAGCTGCGCCCATCATGCAACAAGAGCCAACCGTCGCCCCCTCTAGACTCTGGCTCACAATCCCATGATGCCATATTCCCTGGGGACAAGGAGCCTATCAAGTATGGAGAGCTGATCGTGCTGGGACATAATGGTTCACTAGTGGGTGGTGATAAAGGGCGCAGGAGGAGTCGACTAGCTCTTTACAAGAGACCCAAAGCCAACGGCGTCAAACCTGATGTCATCCACAATGTATCCACACCTCTGGTGTCAAAGgcacTGAGCAACAAAAGCCAGCACAGTATCTCCTACACACTGTCAAGGAGTCATTCTGTTATAGTAGAGTACACACATGACTCCAACACAGATATGTTTCAGATTGGCCGTTCCACAGAGAGCATGATTGACTTTGTGGTGACGGATATGGCGGGCAGCAGCGGGCAGTGCCAAGGTCAGAGTCAGGGGGGTGCGGGTGGAGACGGGGGCCAGTCAGCACAGAGCACCATCTCTCGCTATGCTTGCCGCATCATGTGTGAGCGTAGTGCCCCCTACACAGCCCGCATCTATGCTGCTGGCTTCGACTCCTCCAAAAACATCTTCCTCGGGGAGCGGGCAGCTAAATGGCGGACCTCAGACGGCTTGATGGATGGGCTGACTACCAATGGGGTGTTAGTGATGCACCCTGCGGGGGAATTTGTGTCTGAGCCCACTCCTGGGGTGTGGCGGGAGATATCAGTGTGCGGGAACGTCTTCGCCCTGAGAGAGACACGCTCGGCTCAACAGAGAGGCAAACTGGTCGAGAATGAGTCAAACACACTGCAGGACGGCTCTCTGATTGACCTGTGTGGCGCCACGCTGCTGTGGCGGAGCCCGAGTGGCCTGCGGCGCACGCCTACGCTCAAGCAGCTCGAGTCACTGCGCCAGGAGCTGAATGCTGCACGTCCTCAGTGTCCGGTGGGCTTCAACACGCTAGCCTTCCCCAGCCTGGCGCAGCGTGCCACCGTCGACAAGAAGCAGCCATGGGTCTACATGAACTGCGGTCACGTGCACGGCTACCACAACTGGGGCTTCCGCAGGGAGAAGGATAAGGCAGTGGGGGCAGCTGAGCGCGAGTGCCCCATGTGCAGGAAGGTGGGCCCCTACGTGCCCCTGTGGCTGGGCTGCGAGGGTGGCCTATATCTGGACGCAGGGCCCCCGACACACGCTTTCTGCCCCTGCGGCCACGTGTGCTCAGAGAAAACAGCGCAAGGCTGGAGTCAGATCCCACTGCCGCACGGAACACACGCCTTCCACGCAGCATGCCCATTCTGTGGCACCTGGCTCACTGGCCAGCACGGCCACGTCAAGCTCATCTTCCAAGGCCCCGTTGACTGAGACAGCAGGACTGCATGTGAAAGAAAAGGACTAAAGGACTCGAGGAGTAAATGTATCGGACTGTTACTGCACCAAGATGATGTTGAGagaatatgtaaataaaggTGATGGAATAAAAAGGAAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase pellino homolog 1-like isoform X1

GO: NA

KEGG:

id description
K11964 PELI; pellino

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935869.2 True 1908 mRNA 0.57 7 20661726 20677144
XM_034303290.1 False 1670 mRNA 0.56 7 20661726 20675403

Neighbor

gene id symbol gene type direction distance location
ecsit ecsit coding downstream 157318 20497680 ~ 20504408 (-)
si:dkey-106g10.7 LOC108267586 coding downstream 176068 20479260 ~ 20485658 (-)
men1 men1,LOC107679288,LOC107731945 coding downstream 206264 20447256 ~ 20455462 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding downstream 216777 20425591 ~ 20444949 (-)
LOC117597004 NA coding downstream 242697 20413925 ~ 20419029 (-)
sstr1b LOC108268319,LOC108440852,LOC557645,LOC107558412,LOC107683583,LOC107597921,LOC107679244 coding upstream 78732 20755876 ~ 20768426 (-)
LOC113539812 NA coding upstream 158617 20835761 ~ 20838098 (-)
mad2l1 mad2l1,LOC107730133,LOC107698665,LOC107680902,LOC107732594 coding upstream 218297 20895441 ~ 20899092 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding upstream 335108 21012252 ~ 21160774 (-)
nsmaf nsmaf coding upstream 491746 21168890 ~ 21188778 (-)
G68108 NA non-coding downstream 25527 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 25933 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 30016 20630166 ~ 20631710 (-)
G68080 NA non-coding downstream 90796 20570399 ~ 20570930 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding downstream 94968 20559378 ~ 20566758 (-)
G68186 NA non-coding upstream 126273 20803417 ~ 20804104 (-)
G68466 plag1 non-coding upstream 643674 21320818 ~ 21321146 (-)
G68495 NA non-coding upstream 729967 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 794488 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 795675 21472819 ~ 21473032 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 695875 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 717892 19919480 ~ 19943834 (-)
G67587 NA other downstream 773000 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 780086 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 1506505 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 101394 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 627548 21304692 ~ 21313897 (-)
G68462 NA other upstream 648902 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 677475 21354619 ~ 21371010 (-)
G68760 NA other upstream 1257382 21934526 ~ 21935169 (-)

Expression


Co-expression Network