si:ch211-284o19.8 (LOC108414935)


Basic Information

Item Value
gene id si:ch211-284o19.8
gene name LOC108414935
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26314343 ~ 26318878 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935880.2
GAGTAAAAAGCGAGAAGTTGTTTCTGTTCTGAAAGTGtgtcagagagtgtgtgaaagagtgtgtatgaaagagcgtatgtgagagtgtgtgtgtcagagcgtgtgtgaaagagtgtgtgtatcagagcgtgtgtgaaagagtgtgtgaatgcatttTTGAGTGTGAAAGTGTATTTCAGTGCGCACTAGTTTTCAGACAGAAACAAGTTGCGGCTTTGCAGAATGACAGACATTGAGAAACAGCCGACACCAGAGAAGATGGAGGGTGGAGCCAGTGAAGCTACATTTGCCCCACCTCCTTACCCCACCGACCCAGCCTCAATGCCTCAAGCTGCTCCTTACATGCCCCCTCCTTACCCCTACGACCCTACAGTCTACCCCGTTTACCCTCCGGTACCATGGGGCGGAGATGTTCCATCTCCCGCGCAGGAGATTAACATCCAGGACtcaccagcagggggcgcagAAAGTGAGATTGGAGCATCTGCGACTGCATGTGTCATGTCAGGGTTTGATGACAAGACTGTGCGAAGAGCCTTCATCAGAAAGGTGTTCAGCGTGGTCACTGTACAGCTGTTGGTCACCTTCTCCATcgtgtgtgtatttactttcTCGGAGACAGTGAAGGATGCAGTGCAGGACAACATCTGGATCTACCTCAGCTCCTACATCATCTTTATGGTGGTGGCACTGGCGCTGACCTTCTCCTCGTCCCTCAGCCGCAAACACCCATGGAACTTCATCTCCctatcagTGGTGACCCTCAGTTTGTCCTACATGGTTGGTACTGTAGCATCATTCCACGACACCACAGCTGTGACTATCGCTATGGGAGCAACACTCGTGATCTCCTTCAGCATCATCGTCTTCTCtgctcagACACGTGTGGATTTCACAGTGTGTAATGGCATTCTGATAGTTCTGGCTGTGGATCTGCTCATGTTTGGGTTCTTCAGTACGTTTTATTACTCCAACGTTCTGCAGATTGTTTACGGATGTCTTGGAGCACTGGCCTACGCACTGttcCTGGTTGTCGACTGTCAGCTGGTTATGGGGAGACAGAAATACAGCCTGAATCCTGAGGAATATGTCTTTGCTGCTTTAATCATCTACCTggacatcatcaccatcttcctctacatcctcatcatcctcggAGGAAGCTCAAAAAGCTAAACACTTCTGAACACATCACAGttcttcatcctcatcatcaccatcatcacctgGGTTTAACCACACACGTCAAGACAATTTCACCATTGACTCCATGCAGATTTCAGAAACAGGAGATCAGGAGATCAAGTTCCAATATTACTCATTTATCACTTCCATAGAGATAATCAAATTATCAAAACATCACAACCGTAGagattgtgtttatttaccTGCATGTACGTCACATTTTAACAGTCTAATTTGAGTTTATCTAACAGTTTAATTTGACTAGAGAACATGCTCACTGTcctagagttagggttagggtaaaGTTTAGGGTTAtgtttagggattagggttttGTTTAGGATAAGGTTTAGGGTTAGGCTTACATTTAGGTTTAACTTTAAGGTTATGGTTTGGGTTgtggttaggtttaggtttagggttagggacAGTAAAAATATCTGTTGTCCTGCtgctgtaaaataaagaaatggcctttcttttttgttttcagtgttgATGGATTAGGGTTAGCTGTAATGCtgctgtaaaataaagaaatggcctttctttttttccagtgttgaTGGAGTGAGGTTAGGGGTGAGGGTTAGGTTTAGAGTTAGCTTTTCTGCTATCCTGCTgctgtaaataaagaaatggcCTTCCTTATTTGTTTTCAGCGTTGATGTAAAAACTCTGCATTCCTCAAAGGTTTATTGTTACAGAACCTTTTAAAAGTGGATTGGATATTTTTCTTGTTCTCAGACAATTTAGAAATTATATCACATTTTGCACACAGTTACACAATTTGACAAACTTTGTGATGTTGAATATTTCTCTGATCTTTTCAACTTTGTGCTCTAAATAAATGCTGTTTATTTGCCCCA

Function

NR:

description
protein lifeguard 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935880.2 True 2054 mRNA 0.43 7 26314343 26318878

Neighbor

gene id symbol gene type direction distance location
rasal2 rasal2,LOC107678931 coding upstream 190197 26042923 ~ 26124146 (+)
plk3 plk3,LOC107726922,LOC107557223,LOC107722069,LOC107658359,LOC107678927 coding upstream 334887 25973881 ~ 25979456 (+)
cacybp cacybp,LOC100304883 coding upstream 350185 25954956 ~ 25964158 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding upstream 360444 25951154 ~ 25953899 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding upstream 649933 25643402 ~ 25664410 (+)
mettl17 mettl17 coding downstream 9049 26327927 ~ 26338595 (+)
nfatc4 nfatc4 coding downstream 66039 26384917 ~ 26444378 (+)
myo9b LOC108267238 coding downstream 146893 26465771 ~ 26502494 (+)
mfsd14a2 hiat1a,LOC108413745,LOC107659405,LOC107738165 coding downstream 184230 26503108 ~ 26515244 (+)
insra LOC108267827,LOC107706379,LOC107738166,LOC107668948,LOC107591352,LOC107558844 coding downstream 201838 26520716 ~ 26549993 (+)
G71408 NA non-coding upstream 19361 26294755 ~ 26294982 (+)
LOC117597184 NA non-coding upstream 87928 26225431 ~ 26226415 (+)
G71381 NA non-coding upstream 88006 26224912 ~ 26226337 (+)
LOC117597183 NA non-coding upstream 88979 26224918 ~ 26225364 (+)
G71374 NA non-coding upstream 105799 26208320 ~ 26208544 (+)
G71482 NA non-coding downstream 145133 26464011 ~ 26464314 (+)
G71485 NA non-coding downstream 153697 26472575 ~ 26551026 (+)
G71519 NA non-coding downstream 348884 26667762 ~ 26668128 (+)
G71550 NA non-coding downstream 465694 26784572 ~ 26786560 (+)
G71557 NA non-coding downstream 489179 26808057 ~ 26856605 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 21559 26288290 ~ 26292784 (+)
G71385 NA other upstream 85152 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 90305 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 412337 25897017 ~ 25902006 (+)
tnr tnr other upstream 433233 25707827 ~ 25881110 (+)
LOC117597079 LOC108267150,LOC107738160 other downstream 34311 26353189 ~ 26375826 (+)
gng7 NA other downstream 553798 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 1065929 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1983973 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1997526 28316404 ~ 28338173 (+)

Expression


Co-expression Network