si:dkeyp-66d1.7 (LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859)


Basic Information

Item Value
gene id si:dkeyp-66d1.7
gene name LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26446458 ~ 26452831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935883.2
GCGGAGTGTGTGGAGGTTGttcgttttctctctctctcacactgtaaACTCCCATCACTGAACTCACACTGAATAAGACACACTCTCTTACACAAAGCACTTTTACAGATACACAGTCTGAGCTCAGAGACTCCACGAGACAAGGAGAAGATCAGAGCAGACATCCTTCTTCGCAACAACCCAGCAGCACAGATCAGGCGTGTCTGAGGCGTTCCCATCATGCCAGTGGTGTTCCGCTCCTCCCCGCTGATGTGGTCGCGGGTGGCGGCCATGGTGTTTGCGTGTGTGGCATTTAGCGTAGCTTTGTATGGCGCACAGGTGAAGCATGGTACCGGAGACTGGTGCGTGTTCTGTTGGAGCTTCAGCTTTGCCGGGACGCTACTGATCCTCCTGGTGGAGATCTGCGGCCTACAGTCTCGTGCTCCTGTCTCCTGGAAGAACTTCCCCATTACCTTCGCCTGCTATGCCTCTctactctgtctgtctgcttccATCATCTTCCCTTTATTCTTTCTGAAAGGCTATGGGGGACGTGAGGAATACGTCAACTGCCGCATCGTCTCCACTGTCTTCTCCTGCCTTGCTACACTCGCCTACTTCAGCGAGGTCAGCTTGAGCAAGGCGCGCCCAGGCGAGGTGTCCGGCTACATGGCTACAGCGCCAGGTATTCTGAAAGTCTGTGAGACCTTCATCGCCTGTGTCATCTTCGTTTTCATCAGCGATCCGGTGTCTTATAACCAGAACGCAGCAACAAAATGGTGTCTCTCTGTCTACTGCATCTGCTTCATCCTGTCAGCGGCCATCATCATTATGTGCATCGCTGAGTGGACTGGACTGCTCCCAGTTTCCTTCCCACGTTTCCTGTCCATCTACGCTCTGCTCGCCGTAGCGATGTATCTCTCCGCCACCATCATCTGGCCCATTTACAAGTTTGATGATAAACATGGAGGGAACAGCCACCGGCCGAATGAGTGTGGCTCCTACCAGGGGCTCTGTCCATGGGATAAGACTTTAGCCATTGCTGTCCTCACTGCGCTAAACTTCCTGCTGTATCTTGCAGACCTGATCTACTCAGCCAGGCTAGTCTTCGTTACGGTTTAATCACAGTATTGCATTGCATTGTTTTCCAATACTCTTTCTTCTCAGCCACCATCTTAAATTACTGTTATTAGCTTGAACGATGTGCGTTAGATTAGCATACTCCGACATCACTGTAGTCTCCATGTTTCTTTTCTAAAGCTGTTTAGTAAGGAGCGataaaattctttaaattaaaattgtggTTATCAAGCAGGCTAAGCAGACAACCAGGTAATTTGTACACTCACTAGTTAGCAAGCCAGATTATTCTAGCTAGGTAACACATCAGACTAGTTAGTTAAAAAGCCGATACAACTGTGCATGAAGTGTGAAGATTTCCTCACTTGCACAGTGTTTAGTGGAAGTCTGTGAACGTGGTGTTGGACACAGTATTGGAAAGTGGGCATGGTTGCATGATCAGTGTGGTGTCTGTGGTGTTCCGATGGCTACAATGATGCCACATATGCTAgtctctctttcagtctgttttttccattcaccacaaacaccacagatgacatcacatgaccttagacacactgaagtgtttatttttcagtattaatttgggaagctttattttttagtgttatgtggtttttttcctcattttcagcAATTGTACTATACCAAAGACCTTTGCACATCAGagtaatttttaaagaaaatttcacaaatcatttaaaattacaattttttaaagtttatcatcatactttttttttttacacttacagCTTAgttagttttaataataatatattagcaCATTTATCTCTCTGAACATTGATGCTTTGTCACATTAGAAGGGATTAGCGCATTGATTGAATCAGTGTTTTGGTAATTGTTATGAAGCAGCATGTAGTGCTGGTGCTTATGGATTAGTGCAGAAATGTTTTCACGTTTCACCATCAAGTGTTTAAACACAACTCCTGATAAAACCAGGTGAAGAATTACGTGTATATTCTGATTTATCATGATTTTTACACAGTGTGTTCGAGCTAGAGGATGCTAACTGCAAGCTAAATAAATTAGCATGTCAGACTTAAGACATTAAAAAAGATACAGTTTAAGAACTACTACTCCTATAATGATTCCAGAAATAACGTTGAAGTTATCGTTTAATTTCCATTTTGTCAAATTCATAGTCACtgatttaacaaagaataaaaaataattaaaaaaaactttgtattaaCCACTTCAGGGATTTGAGGCCATTTTCCAAAAACTGAAAATAGTCATGTGATTAAATTCTGGTCATGTAATTGGTCAGAAGAACTGCTAATGCTGTTAGCTAAATGTGCAGTTATCTCAATCTGTATGTTTTTAGCTCAACTTTCAGATGAAATTTGTATATTCTGACATAATTTCACAGGTTTAAATTTAGCATGTTAGCTAAATGacttaaaatacaaatttaaagaCAATAATGAAAAATTGATATATTGTGATTGTGACAGTAttatttttcaatgtttttcAATATATTCTGCTTTTGAAATAAACACGATCGTATCAGTATTACAGTAGGtgtatgcaaattatatatGCTAATTATATGCAAATGTGTTTCGTATGTAAATATCAGCTGTTAGTTACACACGAGTGTGTTTGTTGTGCAGAGTGAGTGTCTGTCACGGGCTGTTACAGTGAGGTTATCACTCTCACactggtgcattgtgggaaatgagctctgaataaaaaagaaagaaaaaaaaaagaaa

Function

NR:

description
myeloid-associated differentiation marker homolog

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935883.2 True 2807 mRNA 0.41 2 26446458 26452831

Neighbor

gene id symbol gene type direction distance location
sdr39u1 sdr39u1 coding downstream 78483 26338735 ~ 26367975 (-)
parp2 parp2 coding downstream 117183 26319287 ~ 26329275 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding downstream 473453 25970634 ~ 25973005 (-)
tnn tnn coding downstream 513697 25904440 ~ 25932761 (-)
pappa2 pappa2,LOC107568983,LOC107722077 coding downstream 815258 25561334 ~ 25631200 (-)
sppl2 sppl2b coding upstream 125963 26578794 ~ 26595990 (-)
ccnl1b ccnl1 coding upstream 219916 26672747 ~ 26678848 (-)
slitrk3b LOC108267197 coding upstream 255251 26708082 ~ 26712304 (-)
copa copa coding upstream 317751 26770582 ~ 26786518 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding upstream 334256 26787087 ~ 26790914 (-)
G71474 NA non-coding downstream 19084 26426258 ~ 26427374 (-)
G71470 NA non-coding downstream 30706 26407975 ~ 26415752 (-)
G71471 NA non-coding downstream 31964 26409175 ~ 26414494 (-)
G71469 NA non-coding downstream 34110 26402539 ~ 26412348 (-)
G71456 NA non-coding downstream 63936 26368686 ~ 26382522 (-)
G71589 NA non-coding upstream 11199 26464030 ~ 26464318 (-)
LOC113540239 NA non-coding upstream 44202 26497033 ~ 26499267 (-)
G71636 NA non-coding upstream 105398 26558229 ~ 26559138 (-)
G71693 NA non-coding upstream 209028 26661859 ~ 26663778 (-)
G71695 klhl6 non-coding upstream 213386 26666217 ~ 26666592 (-)
ltb4r2b NA other downstream 70050 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 1860410 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2141532 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 2914442 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 2928788 23516930 ~ 23517670 (-)
G71596 NA other upstream 19249 26472080 ~ 26551030 (-)
G71832 NA other upstream 643771 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 750952 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 942526 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 943320 27396151 ~ 27396223 (-)

Expression


Co-expression Network