klf17 (LOC108267392)



Basic Information


Item Value
gene id klf17
gene name LOC108267392
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24476189 ~ 24478804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026935888.2
CGCGCGCACGGGAGGCACTCGCACCTTCAGCTCAGAGGTGTCTACTCCTGCTCACTTTGCCTGATGAGAAAGTAAACTTGGTGAATTCTTTAGGTTGTTTGTAAAGGATGGCTCTGGCGGATGCGCTTCTGCCGTCCATTGCTGGCTTTTCCAGCACTCAGGTTTTGGATGAAAAACATGCTGAAATCCTACGAgAATGGTCCACTGATCAGACTGAGATCGGGACAAAACCCCGCGTCGAGGTTGAATTCAGCATTGTAGAGTCCCCGCCACTGACCAAGGACGAGGACGAGTTGTCCAGGTTTCTGGATCTCGAGTTTATTCTGTCTAACTCGATGGCATCACAGAATGAGGGTCCCTCCGTCACCCCTGCGTATCCGCTCCCGGAATCACCggagagctgcagcactgcgTACGACGGCGCCGATTCTGCGCACGGCCTTGTAGCCGAGCTTCTAAGCCCAGACATGGGCTACCGACCCGACACGACTCAAGACTACAACCCGAAAGGACATTTTGATACACCGGAATACACTGATTTGAGCATGCTGGACACCAGAAGTCACGTGCACTTGCACCTCGCCACTCCACACGCGTCGGCTTACAAAATAAAGACCGAGCGTCGCGAGCAGCCGTGCATGATGGCCACTGAGTACCTGGGACACTTTTATGGACAGAAGGTTCACGGTGTTGCTCCCGTGCAGCCGTTCGTCCAGCATGTGCACGACGCGTCCCGGGAGGTGAACGCGCACGTggcgcagcagcagcagcactatGCGTACCCACCGCAATATCACGGCGCGCAGCACTACCATGGACAGTACGCCGTTTTCACGGATCCCATGCGGGCCCATCACCCGGCTATGCCCGGCGCAGTGCTCACGCCACCGTCGTCACCGTTGCTCGAGCTCTACGGCACGGAGGAGAACAGACCGAAGCGGGGACGGCGCGCATGGGCTCGGAGACGCGCCGCCACGCACAGCTGCGAGTTTGCGGGCTGCGGGAAAACCTACACAAAGAGCTCGCACCTGAAGGCGCACATGCGGACACACACTGGTGAGAAGCCGTACCACTGTACCTGGGAGGGATGCGGCTGGAAGTTCGCCCGCTCCGACGAGCTGACCCGCCACTACAGgaaacacacaggacacagaCCCTTCCAGTGCCACCTCTGTGAGAGGGCATTCTCCCGCTCCGACCACCTAGCCCTGCACATGAAGAGACACATGTGAAAACATGCCTTATTTTAAAGGACATTTTTATTAGAGTTAAAGAAGTGGTCCAAGgagaaaaaactattttatacatattttccCTTTACCTCACTTCAATATTGAactagttttgcactggagctcctTAGCTGATGTACCTAAAACAATAATGGAAGCTCATGACCACTAATTAGTCTCACCAAAACATATGTAAATTAGTTTTTTCTTCATGAACTACTCCTTTAAGGCTATGCCTGTGTTTGGACAGCAGGGTTGTAAATATGACGAGGATTGTGTCAACTTTAAATTATAGCAGTATTTAAGAAGAAGAGagttttgttgaaaaaaaaaataagttatttAGTGCAAACATCGAAGACAGCTTTGTAAAGAAACAGGGCAGGACccatatttttgtatatattgcTTTTTGTCTTCATGCTTTCAGGCTGAGACAGGGGAATTTGGCATTTGGGGTTTTTAGTAGAGTTCAGGATCTTCTTATGCCCCTTTTTGTACAATGAGTTGTTAGAACTgttcataaatattcagtatGAACTCAAGGACTTTCAAAGCAGGTActcaagcagtttttttttatccaagtGATATGTTTGTGCAAATATTTTAAACCTTTGTATACTACATACTTGAATATGgtgttttttatgtatataaccactgacaaagttttaaaatacaaaaagttgAACTCA

Function


NR:

description
Krueppel-like factor 4

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0048785 hatching gland development biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0035188 hatching biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026935888.2 True 1930 mRNA 0.49 3 24476189 24478804

Neighbor


gene id symbol gene type direction distance location
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 66892 24294636 ~ 24409297 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding upstream 292435 24178967 ~ 24183754 (+)
opn4.1 opn4m2 coding upstream 299435 24175258 ~ 24176754 (+)
LOC113540614 NA coding upstream 301682 24170646 ~ 24174507 (+)
si:dkey-154p10.3 LOC108267397,LOC107736657 coding upstream 305722 24161778 ~ 24170467 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding downstream 28401 24507205 ~ 24561278 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding downstream 108403 24587207 ~ 24597109 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding downstream 313491 24792295 ~ 24807404 (+)
klhl20 klhl20,LOC106569069 coding downstream 516073 24994877 ~ 25013306 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 542809 25021613 ~ 25047317 (+)
G69987 NA non-coding upstream 337301 24138635 ~ 24138888 (+)
G69966 NA non-coding upstream 391971 24083606 ~ 24084218 (+)
G69946 NA non-coding upstream 466329 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 533117 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 553493 23921800 ~ 23922696 (+)
G70129 ccdc24 non-coding downstream 87441 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 88196 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 91844 24570648 ~ 24570850 (+)
G70138 NA non-coding downstream 95532 24574336 ~ 24574570 (+)
G70139 NA non-coding downstream 104372 24583176 ~ 24583376 (+)
G69971 NA other upstream 366300 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 369966 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1155846 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1823742 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2713888 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 380222 24859026 ~ 24871263 (+)
tnr tnr other downstream 1229023 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1418213 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1737260 26216064 ~ 26224038 (+)
G71385 NA other downstream 1749960 26228764 ~ 26229191 (+)

Expression



Co-expression Network