nmnat2 (nmnat2,LOC107658365,LOC107563562)


Basic Information

Item Value
gene id nmnat2
gene name nmnat2,LOC107658365,LOC107563562
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31710064 ~ 31727552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935889.2
GAAGCCTATCAGCGCGCAGCTCTGCGTCTGGAGGAGTGGAGCAGCTCTGCCGCAGCTGAACCAAACCTCGCCTTTTCCTGGAACATCCAAACAAAAGGCCTGGAAATCGAGCCCGCATGTGAAGAGAGCCGAGGTGGAGCACACTCAGCATGACAGAAACCACCAAAACCCACGTTATCCTGCTTTCCTGCGGAAGCTTCAACCCCATCACAAAGGGACACATCCATATGTTCGAAAAAGCCAGAGACTTCCTGCAAAAGACAGGGCGCTTCATCGTGATTGGAGGGATCATTTCACCTGTACATGACTCCTATGGCAAACCGGGTCTCATTTCTAGCAGACATCGGCTCACCATGTGTCAGTTGGCAGTGCAGTCATCTGACTGGATCAGGGTCGACCCTTGGGAATGTTATCAGGACACCTGGCAGACTACCTGCAGTGTACTGGAGCACCACCGAGATCTCATGAAGAGAGTAACAGGATGCATTCTGTCTAACGTGAACACACCCTCTACCACTCCTGTGATTGGCCAGCCCCAGAACACCACTCCTCCTATCTATCAGAACCGCAACACAGCCAACAAGCCCACAGCTGtTAAGCTGTGGGGAAAGATGAGTGAGAGTCTGGGTAAAATCTGCTGTGTTCGCCCACAAGTGGAGCGCTTCACCTTTGTTGATGAAAACGCAAACCTCGGCACCGCAGTGCGCTATGAAGAAATCGAGTTGCGTATCCTGCTCCTGTGTGGCAGTGACCTGCTGGAGTCCTTCTGCATTCCTGGGCTGTGGAACGAGAGTGATATGGAGGTGATCGTAGGTGACTTTGGGATAGTGGTGGTGCCTCGGGACGGAGCTGACACAGAAAGGATAATGAATCATTCCTCGGTGCTTCGTAAGCACAAGGGCAACATCATTGTGGTGAAGGACGATATGAACCATCCGATGTCAGTTGTCAGTTCAACTAAGAGCAGACTGGCTCTCCAGCATGGAGACGGCCACGTGGTGGACTACCTGACCCAGCCAGTGATCGACTACATCCTGCAGAACCAGCTCTACATCACCGCCTCTGGATAGGAGAGAGGACGCAAGCGGATGCCTCTCTTTAAGCTGCCCCGTTTGTCTCCCTGTGTGTGATTAACAGTGTAGTCCTGCCTCACTCTACCACTGCTTTTTCCATATAGAGGAGCGTAAACTATCTGTCATCCTTTCTAACTGTATCATAGTGACTTGTCAGGAGTAAGGGTGCGCCGCGCTGTGCCGAACAGAGCCGCCCTGTACCGGTGCGATGCGAGGAGATGGAGCAGGTGGACGTAGTGGTCTAATGAGGTGAAGGAAAGGGGTGTGTAAAGAACAGAAATTGGAAGAGGGAGTGTGTAATACAGGAAATGTTACCGGCTTGAATGTTGGCCTTGCTGTCAGTTTGATACTGTCTTTTCCTCTAATTGCATGTCTAGAGGTTTTCTTTTACCGCACGAGTGCTCGAATAGCCTTGTAGACTGTAGTCTGCTGTGACagtgtttgcaaaaaaaaaaaaaaaaagagtgcttAGGCGCCTCTCATCTCTAActtcattttctatttaatatGACTCTGTGTACAAAGGAATTTGGATTGCTGTCATTTATGCAACTGCAAATATTATGCTGCACTGTTCTTGTCTTCAATGTGCATTCATGCATATGTCATTTGTATTTGGTTGCACATTAAAGAATGACCTTTCCTTTTGTGCAGTACTTCTAATAAGGCTGTCTTTGCTTGCCAAAACGCTTAAGAAGCTATTAATATGTTTTCagtaaaaaacaaatcactGCCGTTACTTTGAATATTTTGTGGCTGTCATTTTCAACGTATTTTGACTGTGTAAAAGTAGACACACCTACAGGCTCTCCTCTTGCTTCCAAACTCCTGAGTTGGGTTTGTTTTAAGAAGGAAGTCGAAGAAGAGCTCTGTGTTTTATCACTTTGATGAAAGTGCACATAGTCCCTGATTCCAACTTGATTTCGATATCTGAAATCTGAAGCATTATTTAAGCGATGCAGTGAATAGAACAGCTAAACAATAGAGCAGTGCAGTGAGTTTAAACAGGGCATATAAACGTAATATACACGCACCGGCAGCTTTGTTTTGAACACGTGTACACATTCACGTTCGTGTAATCATCCAGTCAGCCAGTCGTGTAACAGCAGCGCAATGCCTAAATTCATGCAAATGCAGGTCAAGAGGTCTGGCGCTGGCGAAACTGTCCGGTATCGGTGAGCTTGTGCCCACGGTAgcttcagattcttgttcttggctgcaGGAggggaacctgatgtggtcttctgcagtTATagaccatccacctcaaagtttgatgtattgtgtattctgagttgcttttctgctcaccgtggttgtaaagagtgcttatataagttactatagacttcctgtcagctcaaagaGCAACACCGAAAGCCACAGGAGATGTGTTTTCCTCCAGTGGCAGTCAGATTCTACAGCGCCCCAACTTTCTGCCAGAAGGGGTTCTCTAAAACCTAAATGCTGCTTAAGTCAATCATTTTTGTAcagttttttaaagaatattttcatctcacttttatttacagttatatttttacacttatatctccactttatttacattgttACGTTGTAcagttttaaagaatatttttatttaaggaCTAGCATATGTTTGTATCTATCTATAATTTTTTCTTACCAAATATATTGTTATCTTgaactggtttttttttctattgtctTGAGAAAGCTGGCACTAGAACTTCCCTCGGGATGAAGAACGTTTACTTTATCTTATCTTCGAACCAGTCTGACTGTTCTCTGATGAATCTCTGATGATACGgatgcttgatgtgaacattaactgaagctcttgacctgtatctgtatgattttatgcattgctctactgccacctgattggctgattagataattggaTGAACGAGCAGTGGCACAGATAGCCGGTGATTGTATGTTTCATGTAAAAGTaactttattaatataaaagtaGCTATTAATATTACCATTAAAGAGCAGTGAGAGAATTTGAAGGATACTAATTAGGAGTCTGAAATATATTATAACAggttaaacatttatttaacatggctGTTTAACATAACTTTGTTTTGCCCCTTAATTGCACTATAAATGATGTTTATAAAAGTCATCGTTAAGTAGACTCTTTCaatatattgcatatataaCCACCCCTTAGTtagtttaatcatattttattggcTATGAgctgctatggtgagaaacaAACAGGATTAATCTGTCAGAGTCATGCTTCTTTTCCTGAATACTGAGGTGACAGCCACTGAAGAAGTAGAGGTTTACAGCAGGAGGTGATAAAGAATGGGAAGATTTGGCGTTATAAGATAAGAGATCATTCCCTCCCGTATTACTAGCATGGtatttgaatcattttcagtgctTAAAGGTTTTTGATGgtaatgttattaataaggAAAGACTGGTTGAaggtagattgtgccttaaatggCTTGCACGAGTGTGTCGCACTTCTCAGTGATATTATTCCGTATATTTCCTTATGCTCCACCACTGCTTCAGAGTCTTATAGCTGCACATCTCTTAATTAAGCTGCAATACATAATTGTCATGTAATATTATGTTAATGTAtgaattttaagcttgaaatttaTGACCACATTGGATAAGTGAAATATGAACTAGttcatttttagtaatttttaCAATAAGTAAGTAAGGATAGTGATTTTATCTACGTGAAGGCTGATAGAATGGAGCACTTGGTTAGATTGTATTGGCAAGTCTTTTGTAGAAGGtatattttttcactgtttcGTGACATACTTAAACTGAATGAATTCAAACTAAAACGTGTATTGTATACTTGCTACTACTTAAACTTCACAAAACCGTGACCAGTGACTGTACTTCATCCAAGTAGATGTTGGTTTCTTCAGCTTCAGATCTGATCTCTTCATCAAATCATTGTGCATGATGCAATAATATGGTTTAACACAGGGTTAGAACGGATACGTGCTAAACATCTCACTCTGCATGgcttacacacactccagattTGCTGTAATATACCTCTATAATCCACTCAGCTTACTACACATAGCTCTGATGTTAGTGCAGATCATAATCTACACTTCCTTTCAGTTTAGTTTCAGATTATACAGATTATTTTATCTctgctttttacatttattattaatgcttgATTATAATTGTACGTGTCTGTTGATGTGCACATAATGGaacagatatataaaaaaacacatcgTGGtgccagtg

Function

symbol description
nmnat2 Predicted to enable nicotinamide-nucleotide adenylyltransferase activity and nicotinate-nucleotide adenylyltransferase activity. Predicted to be involved in NAD biosynthetic process. Predicted to act upstream of or within pyridine nucleotide biosynthetic process. Predicted to be located in Golgi membrane; axon; and cytoplasmic vesicle membrane. Predicted to be active in Golgi apparatus. Is expressed in cranial ganglion; neurons; retina; retinal ganglion cell layer; and trigeminal placode. Orthologous to human NMNAT2 (nicotinamide nucleotide adenylyltransferase 2).

NR:

description
nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2-like

GO:

id name namespace
GO:0009435 NAD biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0004515 nicotinate-nucleotide adenylyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG:

id description
K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935889.2 True 4322 mRNA 0.41 11 31710064 31727552

Neighbor

gene id symbol gene type direction distance location
LOC113540064 NA coding downstream 165430 31538539 ~ 31544634 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding downstream 176806 31528370 ~ 31533258 (-)
LOC113540461 LOC108267708,LOC107591395 coding downstream 207686 31379473 ~ 31502378 (-)
LOC113540063 LOC108267709 coding downstream 345793 31360647 ~ 31364271 (-)
LOC113540523 LOC108267123 coding downstream 353092 31353902 ~ 31356972 (-)
LOC117597140 NA coding upstream 1096006 32823558 ~ 32825567 (-)
LOC117596924 NA coding upstream 1107487 32835039 ~ 32835722 (-)
LOC117596934 NA coding upstream 1116549 32844101 ~ 32845270 (-)
LOC117597141 NA coding upstream 1245233 32972785 ~ 32977700 (-)
LOC117597142 NA coding upstream 1268804 32996356 ~ 32996892 (-)
G74417 NA non-coding downstream 59480 31567051 ~ 31650584 (-)
G74256 NA non-coding downstream 399155 31236413 ~ 31310909 (-)
G74255 NA non-coding downstream 483476 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 593628 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 678684 31030389 ~ 31031380 (-)
G74458 NA non-coding upstream 8740 31736292 ~ 31785757 (-)
G74479 NA non-coding upstream 16799 31744351 ~ 31745462 (-)
G74457 NA non-coding upstream 25569 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 139530 31867082 ~ 31870008 (-)
G74553 NA non-coding upstream 166299 31893851 ~ 31901557 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other downstream 432815 31247060 ~ 31277249 (-)
ccl20l LOC100304631 other downstream 934245 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 959096 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1687539 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1979207 29724588 ~ 29730857 (-)
LOC117597010 NA other upstream 142966 31870518 ~ 31871874 (-)
G74547 NA other upstream 146757 31874309 ~ 31874827 (-)
G74550 NA other upstream 152482 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 155391 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 178074 31905626 ~ 31910974 (-)

Expression


Co-expression Network