LOC113539830


Basic Information

Item Value
gene id LOC113539830
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20091887 ~ 20099077 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935895.2
ccacacaggtaCAGAGGCGCGCGCGCACACCTAGGGGAAAGTTAAAATGGAATTATTATAGATTAAATGCATATTAGAGACACCATATATAGGCATAGGGAAATTAACAGACTTCCTTCTTATGAAActaaacaccacactgaaatGCTAGTCCAGTGAATAAGCTCCTTCACTCCTCCCATGCAAATGATTCACTTTGAGTAAGTCCTGCTAACACGACAGGCTCATTTTCCACTGTGGACTCGTCTGGTGATGATAGACAAGTTCGTTACTGAAAATAAGCttgggaaagttttttttttttacaagaattTTTAACACATGTTTAAACACAAGTATGTTAGAGTATTGAGTAGAAACGCGATAATGTTTTGCGGATACTGGAATGTGGACTTCGTACGCCTCCTGTGTTTCTCCCTCATGCTGGCTGGAGTTGCCTCAGAATCAGTGAGACCACCACCCACATTTGAAATCATTGAGAAAGGAAATTATCTCAATTTTCACGCAAGTGCCCCTGAATCAGAATCGCCTCACTGCTGGACGTACATGTTTTGGTACAGAAAATGCAATGAGGAAAAAGTCACTACAACTGCAACTAAAGACAGCAATTGGACAGCCAAGGTGGAATACGATGCTGCCTGCAAGTACCATGTTCAACTGCAGGCAAAATATGATACAACGTACTGTGGGGACGTTGAACTTGACAGTAACATAAGCAAACCTGTGTATTTCGGTCAGGATGGTGATCCAGATTTGCCATTTAAAGTGTCTATGATTGTCATCCCTGTAATAGCATGCTCTTGTCTTAGCATTGCTATAGTGCTGTTTAGGAGACACAAGCAGAAATTATTCCCCAAAGTTCCCAGTCCATCACATTTCTTCAATGATATGTTTGACAGGAACAAAGAAATGACAAAGAGCCTATATGTGAGAGAACTCTATGTGCCTGATGAAGAGGTGGTGGAAGAGATCCAACAAGTCATGAATTCTAATCAGTAAAACAACATAAAGGATGAACATGTTctagatgaagatgaagatgccCAACAACTCAGCAAAGGAGGAATACAATGCAGCTTTGCAGATACACTGTAACCCTAGCCCTAACCCAAGTGCAACCagaatatactgtctaatgtggTAATTCTTGATATATGTGCTATAGCTCTGCAAGATGTCATCCTCTGCCTTATTCCAATCAGGTCTGGAGACCGAGAGGGTCATGGCAGAAGCTCCTTTCAAAGTATTTTTCTACTGAtattgtgctgtttttggaTTGATGTCTTCCTGCATTTCATATTTAACCCGAGTGATACACGTCACTCTgacatgaccaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935895.2 True 1346 mRNA 0.41 7 20091887 20099077

Neighbor

gene id symbol gene type direction distance location
LOC113540456 LOC108268101 coding upstream 4582 20081770 ~ 20087305 (+)
LOC113540455 NA coding upstream 16852 20069061 ~ 20075035 (+)
ntn4 ntn4 coding upstream 108610 19971311 ~ 19983277 (+)
si:ch73-71d17.2 LOC108267752 coding upstream 138664 19943740 ~ 19953223 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding upstream 205186 19881928 ~ 19886701 (+)
trnar-ucu_2 NA coding downstream 1948 20101025 ~ 20101098 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding downstream 3404 20102481 ~ 20129464 (+)
hacd4 hacd4 coding downstream 60235 20159312 ~ 20166249 (+)
mllt3 mllt3,LOC107683508 coding downstream 122811 20221888 ~ 20271231 (+)
c4h4orf54 LOC108268294 coding downstream 190720 20289797 ~ 20297146 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 125999 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 174718 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 177484 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 203162 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 210148 19879978 ~ 19881739 (+)
G67827 NA non-coding downstream 150981 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 381523 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 536271 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 593186 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 765801 20864878 ~ 20895955 (+)
dock11 dock11,LOC107683516 other upstream 24667 19990684 ~ 20067220 (+)
G66864 NA other upstream 1233235 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1883323 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1948256 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 2080925 18000158 ~ 18010962 (+)
fcer1g LOC100305060 other downstream 48718 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 921181 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1215141 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1529999 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1653339 21752416 ~ 21762301 (+)

Expression


Co-expression Network