si:ch73-335l21.2 (LOC108268347,LOC108442822)


Basic Information

Item Value
gene id si:ch73-335l21.2
gene name LOC108268347,LOC108442822
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13391809 ~ 13394172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935896.2
TCCAGGTAGAATAGAAATTTAAATCACAAGCTTGTCAAATGATGATGAGAACTGTATATTAACTAGAGGAGAAGAAATGAGGCATCAAAATCATCACTGCTCCCTCTCCTAGAAACCAAACCATCTCTAGGTAATAAATGTCAGGGAAACTTGCCCCCTTGGTAGGACACAAGGCATAGGATCAAGGGAATTAAAGAGGGGGGTAGAGAAAGTGAGCTTACAcataatccaaaacatacatGTGTTCATAAAAGCATGAGACTTGACAGAGGTGACACTGAAGGCTGagtatatattttcttttaatgtgaCATATAAAAATGGACGTGCTGCTCAAATGCAAGAAGAGACACAAGGCTTCACTGGAAAAGTAGGACCAGTAATTCTTTGAAAAGCTCTGTCTAACAGACAGGGTTCCTTTCAGGTTCCCAAATCACATTATAGATCTCAATCTCAGAAGTTTCCATCCACAGTCTACCTCCATGTCAGTGGCCCCAGTACCAGTTGCAACATCTGCCAAGGAGGAAACCTCTGCCAGCGGGGATTCCCCAGAAGTGGAATGCCCCGTGTGTTACCAGGAATATGATAAAGATCGCAAGCTCCCACGTATGCTGGAATGCCTCCATGTCTTCTGCACAGAATGCCTTCATAATATCCAGCTGTCCCCTGTCCACCCACCCGATCCCAACAGCCCTCCTTCCATCTCCTGTCCCTTGTGCCGCCACTCCACCCCACTAGAAGGTGGCGATGCACACTCCCTCCCGTGCAACTCCCGTATCCTCGCTCAGCTACCTCCTGTAACTTTTCGCCTGCCTGTGTCAGTCTCAACCCGGCTGGCTACTGTCACTCAGAGAGTGATCCTGTCTCTGGAGTCACGGGATGCTCggtttattattttacccaCAGTCAGCCTACGGGTGGAGCAGATGGGCGAGGGCACAAGCACGCCTGAGTCCATAGCAAGTACAGTGGAGGGgctgaggaggagaaagagcCTGATGTGTGTCCAGATGTTGGTTGTGATATTCTGGATGCTTTTTGTCCTGGCCTGCGTGGTGGGAGTGCTGTTCGGCCCTAATTTGTTCCACCACTGAAAGACAGAACAATCACAGAATTCGTCTATCATATGTAATTTAATgcaaaattagcaaaataattCAGTTAAGCATACAAAACCTCAAAATCTACTGTATAgtactgttttttatttcttaataaatttGACATGTTTTGATTTAGCATACAGTGTGACCACTAATTACTACCTTCACTTTTGTAGCCTTAGTTCCATTGCCATAATCTCTGAATCCATATACTGTGTAGTGGCTGtctaaatatcaaaataaactgGAAAATCAA
>XM_026935898.2
ATTCCAGGTAGAATAGAAATTTAAATCACAAGCTTGTCAAATGATGATGAGAACTGTATATTAACTAGAGGAGAAGAAATGAGGCATCAAAATCATCACTGCTCCCTCTCCTAGAAACCAAACCATCTCTAGGTAATAAATGTCAGGGAAACTTGCCCCCTTGGTAGGACACAAGGCATAGGATCAAGGGAATTAAAGAGGGGGGTAGAGAAAGTGAGCTTACAcataatccaaaacatacatGTGTTCATAAAAGCATGAGACTTGACAGAGGTGACACTGAAGGCTGagtatatattttcttttaatgtgaCATATAAAAATGGACGTGCTGCTCAAATGCAAGAAGAGACACAAGGCTTCACTGGAAAAGTAGGACCAGTAATTCTTTGAAAAGTCTACCTCCATGTCAGTGGCCCCAGTACCAGTTGCAACATCTGCCAAGGAGGAAACCTCTGCCAGCGGGGATTCCCCAGAAGTGGAATGCCCCGTGTGTTACCAGGAATATGATAAAGATCGCAAGCTCCCACGTATGCTGGAATGCCTCCATGTCTTCTGCACAGAATGCCTTCATAATATCCAGCTGTCCCCTGTCCACCCACCCGATCCCAACAGCCCTCCTTCCATCTCCTGTCCCTTGTGCCGCCACTCCACCCCACTAGAAGGTGGCGATGCACACTCCCTCCCGTGCAACTCCCGTATCCTCGCTCAGCTACCTCCTGTAACTTTTCGCCTGCCTGTGTCAGTCTCAACCCGGCTGGCTACTGTCACTCAGAGAGTGATCCTGTCTCTGGAGTCACGGGATGCTCggtttattattttacccaCAGTCAGCCTACGGGTGGAGCAGATGGGCGAGGGCACAAGCACGCCTGAGTCCATAGCAAGTACAGTGGAGGGgctgaggaggagaaagagcCTGATGTGTGTCCAGATGTTGGTTGTGATATTCTGGATGCTTTTTGTCCTGGCCTGCGTGGTGGGAGTGCTGTTCGGCCCTAATTTGTTCCACCACTGAAAGACAGAACAATCACAGAATTCGTCTATCATATGTAATTTAATgcaaaattagcaaaataattCAGTTAAGCATACAAAACCTCAAAATCTACTGTATAgtactgttttttatttcttaataaatttGACATGTTTTGATTTAGCATACAGTGTGACCACTAATTACTACCTTCACTTTTGTAGCCTTAGTTCCATTGCCATAATCTCTGAATCCATATACTGTGTAGTGGCTGtctaaatatcaaaataaactgGAAAATCAA
>XM_034303510.1
TTCCAGGTAGAATAGAAATTTAAATCACAAGCTTGTCAAATGATGATGAGAACTGTATATTAACTAGAGGAGAAGAAATGAGGCATCAAAATCATCACTGCTCCCTCTCCTAGAAACCAAACCATCTCTAGGTAATAAATGTCAGGGAAACTTGCCCCCTTGGTAGGACACAAGGCATAGGATCAAGGGAATTAAAGAGGGGGGTAGAGAAAGTGAGCTTACAcataatccaaaacatacatGTGTTCATAAAAGCATGAGACTTGACAGAGGTGACACTGAAGGCTGagtatatattttcttttaatgtgaCATATAAAAATGGACGTGCTGCTCAAATGCAAGAAGAGACACAAGGCTTCACTGGAAAAGTAGGACCAGTAATTCTTTGAAAAGtaacagtgCTCTTTGAGGGTAATCATAAAGCCACACATTTTTAACCGTTTCACAGCTCTGTCTAACAGACAGGGTTCCTTTCAGGTTCCCAAATCACATTATAGATCTCAATCTCAGAAGTTTCCATCCACAGTCTACCTCCATGTCAGTGGCCCCAGTACCAGTTGCAACATCTGCCAAGGAGGAAACCTCTGCCAGCGGGGATTCCCCAGAAGTGGAATGCCCCGTGTGTTACCAGGAATATGATAAAGATCGCAAGCTCCCACGTATGCTGGAATGCCTCCATGTCTTCTGCACAGAATGCCTTCATAATATCCAGCTGTCCCCTGTCCACCCACCCGATCCCAACAGCCCTCCTTCCATCTCCTGTCCCTTGTGCCGCCACTCCACCCCACTAGAAGGTGGCGATGCACACTCCCTCCCGTGCAACTCCCGTATCCTCGCTCAGCTACCTCCTGTAACTTTTCGCCTGCCTGTGTCAGTCTCAACCCGGCTGGCTACTGTCACTCAGAGAGTGATCCTGTCTCTGGAGTCACGGGATGCTCggtttattattttacccaCAGTCAGCCTACGGGTGGAGCAGATGGGCGAGGGCACAAGCACGCCTGAGTCCATAGCAAGTACAGTGGAGGGgctgaggaggagaaagagcCTGATGTGTGTCCAGATGTTGGTTGTGATATTCTGGATGCTTTTTGTCCTGGCCTGCGTGGTGGGAGTGCTGTTCGGCCCTAATTTGTTCCACCACTGAAAGACAGAACAATCACAGAATTCGTCTATCATATGTAATTTAATgcaaaattagcaaaataattCAGTTAAGCATACAAAACCTCAAAATCTACTGTATAgtactgttttttatttcttaataaatttGACATGTTTTGATTTAGCATACAGTGTGACCACTAATTACTACCTTCACTTTTGTAGCCTTAGTTCCATTGCCATAATCTCTGAATCCATATACTGTGTAGTGGCTGtctaaatatcaaaataaactgGAAAATCAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103371741

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935896.2 False 1359 mRNA 0.45 2 13391811 13394172
XM_026935898.2 False 1283 mRNA 0.45 2 13391809 13394172
XM_034303510.1 True 1415 mRNA 0.44 3 13391810 13394172

Neighbor

gene id symbol gene type direction distance location
si:ch73-335l21.1 LOC108267519,LOC105020633 coding upstream 16759 13328033 ~ 13375050 (+)
agfg2 LOC108267520,LOC108442826 coding upstream 64590 13311880 ~ 13327219 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding upstream 139995 13245985 ~ 13251814 (+)
trip6 trip6,LOC103041331 coding upstream 149409 13232634 ~ 13242400 (+)
kdm6ba kdm6b,LOC106608825 coding upstream 193260 13116216 ~ 13198549 (+)
dvl2 dvl2 coding downstream 5263 13399435 ~ 13416861 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding downstream 26361 13420533 ~ 13436596 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding downstream 49622 13443794 ~ 13450823 (+)
si:dkey-33c9.6 LOC108267836 coding downstream 92364 13486536 ~ 13500833 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding downstream 139645 13533817 ~ 13553948 (+)
G63889 NA non-coding upstream 3855 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 124775 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 191947 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 255949 13135659 ~ 13135860 (+)
G63685 NA non-coding upstream 272132 13119468 ~ 13119677 (+)
G63901 NA non-coding downstream 23049 13417221 ~ 13417441 (+)
G63898 NA non-coding downstream 65190 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 110288 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 175830 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 301477 13695649 ~ 13748072 (+)
slc16a13 slc16a13 other upstream 105975 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 171950 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1096676 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1686473 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1786579 11590715 ~ 11605230 (+)
G63903 NA other downstream 24205 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 74380 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 164451 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 311245 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 861572 14255744 ~ 14269340 (+)

Expression


Co-expression Network