larp7 (larp7)


Basic Information

Item Value
gene id larp7
gene name larp7
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19034492 ~ 19042269 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935902.2
TTGTGTTTGTAGCGCGCTTCGTGAAACGTCATCGATATGCGCCGAGAATTTCTGCACGCCGAGTATTCTCGCgagtaacttttttttctattcaaacATCTGACTTGCTGGTTTAAACTCACAAATGTAGCAGAGAGAGTTCGTAACGATTAAATGCATAAGTGAGTAGCATTGGACCTCGTTGAGAATTCATAATTCTCTACAAGAAGCAAAACGTTACTGAAACGTTGTTTGAGCAAGAGCCGTACTAGCTAATTGCTTTTCAAGCCAACTCACTGCTTCTTGCAAACAATGACGGTTGGGTTTTAATGTTTTCGCTTCGATAAACAGTTTCACAAGTTCTGAATATGGTTGATGCTGGGATGTCGAACATTACGACTGGAGACAACATGTCTGCCAAGGAGCCAGGTGAGAAGAAGCGAGacagtgagaaaaagaagagatcTCGAGTCAAACAGTTGCTGGCAGACGTGAAGAGACAAGTAGAATTCTGGTTTGGTGATGTAAATCTCCACAAGGATAAATATCTGCGGAATGTCATCGTGCAGTCAAGAGATGGCTATGTTGATATATCTCTCTTAACAACATTCAACAGAATGAAAAAGCTGACCACAGATAGCAAGCTGATAGCTAGAGCTCTCAGAAATTCAGAAGTGGTAGAGgTTAATCTTGAAGGAACACAAATAAGAAGGAAACAGGCACTCGGGGAGAGCCCGAGAGATGTAGATGACCGCACAGTATATGTTGAACTTCTACCAAAAGATGTTACCCACGTTTGGATAGAACGAGTGTTCAGTAAGTGTGGGAATGTGGTGTACGTTAGTATCCCCAGGTACAAGTCTACAGGTGATTCCAAGGGCTTTGCCTTTGTGGAGTTTAAGACTCAAGCACAAGCACAGAAAGCCATTGAGATGCTGAACAACCCTCCAGAGGATGCCCCAAGGAAGGCAGGCATTTTTCCCAAGACCTTGGCGAGAAAACCGATTCCTTTTCCTACAGTACAAGAGAGCACAAAAGATGTGGATGAATGGAGAGGAGAAGATGATGaggatggaaagaaaaagaaaaaaaagaaaaagagaacacGCAGCGAGCAGAAAGATGATTTTGTTGAAGAAATGGCAACTGAGAAGGTGACTGACAATGAGCACGCTGCTGAGACCGAAGCAGCCGGCAGGAAAAGTGCGCAGTCTTCAGAGGGCACTGAGACGGAGAGTGTGACTGCCGTCAAAAATTCACAGAAGAAGGCAGATAAGAAAAGACGCCGGTCCCACAGCTCAGAACTGTCTGGGGGAGAAGGCCAAATGGAGAAGCCCGCCAAAATGAGGAAAGTGGATGAGGAGGCGAGTGACATGAAGGAGCTGTCATCtgagaacaaaaaagaaaaggaaatggaGGATGGAAAAAAGGATGAGAAAGATGATTCCATATTAAAGGCCAAGAGGAAGCGAAAGAAGAAATATAAAGAGAGACTGAAGATTGAGGAAGAGGTTATTCCCCTCAGAGTTCTCTCAAAGAAAGAGTGGTTGGAGCTGAAGAAGGAGTATTTGGCACTCCAGAAGCAGTGCATGGCCAATCTGAAGAAGAATATTTCTGACATTCAAAAAACAACAGCATGTGACAATCTACAATCTATTGAGGACAGTGGGAAAACCTGGGGTGATTGCAACCCTAAAAAAGAAACTCCTGATGGGCCGAAGTTTGAGAGTGGAGTCATCCTCAAAATCACCCACAACCAGCCTTTGCCTAACAAAAAAAGTGTCAAGgaCACCCTGTCTGAGATATCGGCAGTACAGTACGTGGACATTGTGGAGGGAGATGCCGAGGGTTATATCCGCTTTAAGACTCCTGAAGATGCCAAAGCTGTCATCGCAGCTCGTTCCGAACTGCAGAAAAAGCACAACTGGAACCTGGACGTCCTGACTGGTGATCATGAACAAAGGTACTGGCAGAAGATATTGGTGGATCGACAGGCTAAACTGAATCGACCCAGGGACAAAAAGCGAGGCACGGAAAAGCTTATTTCCAAGGCTGAGAAAATCATCATCGCTCGGACCAAAGAGGCAAATAAGCACATTCGATTTGACGATTAACAACCTTTGcaaccatttatttttaaatatgcattgcatatttaaagcaatgtttaacgtaattctttttttttttcgttttgcACTGATAATtgtttgatttggtttgatTGTTTTAATGAcatgaatttttcatttaaattaatattgaaTGTTTTAGAGTTGATATGGTAAatgtgtcccttttt

Function

symbol description
larp7 Predicted to enable 7SK snRNA binding activity and U6 snRNA binding activity. Acts upstream of or within cardiac muscle tissue regeneration and regulation of cardiac muscle cell proliferation. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Is expressed in blastoderm cell and brain. Orthologous to human LARP7 (La ribonucleoprotein 7, transcriptional regulator).

NR:

description
la-related protein 7

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15191 LARP7; La-related protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935902.2 True 2281 mRNA 0.43 13 19034492 19042269

Neighbor

gene id symbol gene type direction distance location
plin2 plin2,LOC100304704,LOC100526709 coding downstream 5594 19025133 ~ 19028898 (-)
haus6 haus6 coding downstream 10585 19015356 ~ 19023907 (-)
LOC113540750 NA coding downstream 17092 19017270 ~ 19017400 (-)
LOC113540749 NA coding downstream 17539 19016823 ~ 19016953 (-)
dennd4c dennd4c coding downstream 20187 18964454 ~ 19014305 (-)
LOC113540506 LOC108267151 coding upstream 2553 19044822 ~ 19049448 (-)
LOC113540739 NA coding upstream 180470 19222739 ~ 19222843 (-)
ostc ostc,LOC107568856,LOC107558957 coding upstream 298364 19340633 ~ 19344519 (-)
rpl34 rpl34,LOC107566275,LOC107573163,LOC107681344 coding upstream 305371 19347640 ~ 19351961 (-)
LOC113540492 hmx1 coding upstream 384072 19426341 ~ 19429551 (-)
G67016 NA non-coding downstream 86953 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 519774 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 647502 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 1013683 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 1169609 17864010 ~ 17864883 (-)
G67454 NA non-coding upstream 286079 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 290805 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 563223 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 574179 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 727088 19769357 ~ 19824919 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1194577 17792226 ~ 17839915 (-)
G66281 NA other downstream 1399624 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1590304 17439477 ~ 17444188 (-)
G66053 NA other downstream 1632028 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 2428775 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 7881 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 837699 19879968 ~ 19881640 (-)
G67587 NA other upstream 845910 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 877211 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 920313 19962582 ~ 19965851 (-)

Expression


Co-expression Network