plin2 (plin2,LOC100304704,LOC100526709)


Basic Information

Item Value
gene id plin2
gene name plin2,LOC100304704,LOC100526709
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19025133 ~ 19028898 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935905.2
CAGCGGGTATAAAAGCGAGATCAGGCGCTCTTTCGGGAAAGTTTACTAAGCGCGTCTGACTCAGAGTTTCAAGTTTGTCTTCCGGCTATAGACACAGAACAACGGTGAGAGACATGCCTCCTGTGGAAATAATGAACGAGAATGTGGTTACTCGAGTGGCCAAGCTTCCACTGGTGAGTTCCACCTATGGCATGGTGTCAGATTTGTACAGTAACACCAAAGACAACCATCCAACCATCAAGTCGGTGTGTGAGGCAGCAGAAATGGGTGTAAAAACGATCACTTCAGCTGCCTTTACCAGCGCCTTGCCAATCATTGGCAAGCTGGAACCTCAAAtCTCTCGGGCTAACGACCTCGCCTGTAAGAGTCTGGATAAAATTGAGAAGACCCTGCCAATTCTTCACCAGCCTTCTGGACAgCTTGTTACCAGTGCTAAAGACCGGGTCACTGAAACCATGAACGGGGCCAAGGAGACCATGTCTCACACCCTGAGTCACGTGATGGGCCGAACCCGAGGAGTAGTGCAGGAGAGCATGGAGAAGACGAGGATGGTTGTCACTGGTGGTGTCCACACAGTGATGGAGAGCAAAGTGGCTAAGCTTGTGAGCAGTGGTGTGGACACTGCCCTGAGCACGTCAGAGATTCTGGTAGAGCGCTATCTGCCTGCACCTGAGGACAGCCAAGAACACGAGATAAATGTGACCAAAGGTTTTGATGATGAGACCAATGAACCCAGCTACTACGTGCGACTGGGCTCAATTTCTACCAAGCTGCGACAGAGGGCTTACCAGAAGGCTATCAGCAAGGTTCGTGATGCCAAGAACAACAGCCAAGAGTCCATCTCTCAGCTAAACCGCACCATGGATCTGATTGAGTACACAAGAAAGAACATCAGTGGTGCCAACCAGAAGGTGGTTGACAAATTGAGCGCATTAATGGACTGGAAGTCTACATCTCAGAGCGACAGTGACACAGAAAACAAGGCAGAGCTAATCGAATCCCGGACCTTGACCATTGCTCGCAACCTGACGCAGCAGCTACAGGCGACTTGTTTGACCCTCGTGTCCAACCTCCAGGGCCTGCCACAGAACATCCAAGAGCAAACACTGTCCATTGGCCACATGGCCATGGATGTGTACGCCAGGTTCAACAATGCTGCAGCTCTGAGCGACCTGTCCGACACGGTGCTCACCAACACTCGTGGTCAGCTGATGCGCATGAGAGATTCCATTGACAACGTCATGGATTATTTGGTCAACAACACGTCACTCAACTGGCTGGTGGGTCCGTTTTACCCTCGCACAGAACCAACTAGAAAACCAAGAAGCCAGTCCAGTGAAGAGAGCAGTGTTCAGCCTGAAGTGGAAATGCAGCCACTTGATCAGGAACATTAGTTTACCCACACTATGTCTTTGCAatgttttctgaatttctgataagtcttttttttaatcatgtttttttttttatcttgatgCTGGTAATGTACAttctttattataaaatactactcaTTCTATCCCTCCCTCTACTTCTATCTCTATCGATACTACTCTTTCAATCTACCCATGAAATAAACAATTTGCAGTATTTACACTATCAATCAATTCCTCAGTAATGTAAAAACACATGACCAAGTTAATAAATGAGTTTTGTTGCATCA

Function

symbol description
plin2 Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet. Is expressed in digestive system. Orthologous to human PLIN2 (perilipin 2).

NR:

description
PREDICTED: perilipin-2

GO: NA

KEGG:

id description
K17284 PLIN2, ADRP; perilipin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935905.2 True 1663 mRNA 0.47 8 19025133 19028898

Neighbor

gene id symbol gene type direction distance location
haus6 haus6 coding downstream 1226 19015356 ~ 19023907 (-)
LOC113540750 NA coding downstream 7733 19017270 ~ 19017400 (-)
LOC113540749 NA coding downstream 8180 19016823 ~ 19016953 (-)
dennd4c dennd4c coding downstream 10828 18964454 ~ 19014305 (-)
acer2 acer2,LOC107601172,LOC107691831,LOC107675399,LOC107559953 coding downstream 61384 18954712 ~ 18963749 (-)
larp7 larp7 coding upstream 5594 19034492 ~ 19042269 (-)
LOC113540506 LOC108267151 coding upstream 15924 19044822 ~ 19049448 (-)
LOC113540739 NA coding upstream 193841 19222739 ~ 19222843 (-)
ostc ostc,LOC107568856,LOC107558957 coding upstream 311735 19340633 ~ 19344519 (-)
rpl34 rpl34,LOC107566275,LOC107573163,LOC107681344 coding upstream 318742 19347640 ~ 19351961 (-)
G67016 NA non-coding downstream 77594 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 510415 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 638143 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 1004324 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 1160250 17864010 ~ 17864883 (-)
G67454 NA non-coding upstream 299450 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 304176 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 576594 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 587550 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 740459 19769357 ~ 19824919 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1185218 17792226 ~ 17839915 (-)
G66281 NA other downstream 1390265 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1580945 17439477 ~ 17444188 (-)
G66053 NA other downstream 1622669 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 2419416 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 21252 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 851070 19879968 ~ 19881640 (-)
G67587 NA other upstream 859281 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 890582 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 933684 19962582 ~ 19965851 (-)

Expression


Co-expression Network