ankrd46b (ankrd46,ankrd46b,LOC108428588)


Basic Information

Item Value
gene id ankrd46b
gene name ankrd46,ankrd46b,LOC108428588
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13882312 ~ 13889584 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935907.2
CTTTAGGTGGCGGTGTGGCACTTTAGTCGCAAAGCGTTACAGATATTGCAGTGCCTTCAGCATCAATACAAACAACAGTCCCGCTGTGGAACAGCTGCGAAATCACATTTTCTCTACTGATTTGGTGCATTATAAACAGGTACGCTGGAATATTCAGAGACCCTCTCGGACATGTCATATGTCTTCATCAATGACACGTCGCAGACAAGCGTGCCATTACTGCAGGCCTGCATTGATGGAGACCTAGCATTCGCCAGGCGGCTCCTGGAGACAGGCTGTGATCCTAACATCCGTGACAACCGGGGTCGCACCGGCCTCCACCTAGCAGCAGCACGAGGCAATGTGGAGATCTGTCGTTTCCTGCACAAATTTGGAGCAGATCTGCTAGCCACCGATTATCAAGGAAACACGGCACTGCATCTGTGTGGACATGTTGACACCATTCAGTTCCTTGTCTCCAATGGCCTCAAAATAGACATCTGTAATCATAATGGCTCAACTCCTCTGGTGCTGGCCAAGCGACGAGGCGTGAATAAAGATGCCATTCGGCTGCTGGAGGGTCTGGAGGAGCAGGAGGTGAAGGGCTTCAACAGAGGCACTCATTCCAAACTAGAGACCATGCAGATGGCTGAGAGTGAGAGTGCAATGGAGAGCCACTCACTGCTGAATCCCAACCTGCAGAACAGTGAGGGTGTACTGTCCAGTTTTCGCTCCACCTGGCAGGAGTTTGTGGAGGATCTGGGTTTCTGGAGGGTTCTCCTGTTGTTAGTGATCATCGCCCTGCTCTCTCTGGGCATTGCTTACTATGTGAGTGGGGTACTGCCCTTCTCTGCCAGCCAGCTGGAGCTGGTCCACTGAAAACCACAAATGCACTTGGTTTCAAACCTAGTCTCGGATCCCACAAAGCTGTGTTTTATACGATTtaatgattttcttcatacGAGTTAGCTCTTAAGTTACTCTTCTCTGGCTAATGCTGTGTGGAACTAAAATTAAGGCATGTATAGCTTGACAAGTTACTGTTTTTCAGAAAGTCTTAAAAACATGAAGTATTTACAGTATGTGGAGGAATGTCTTTGAGAAAGGACTTGTTTTGATTATGGTGTGTTGTGAACAGTGTTTAAAAGTCTTACAGAATGAAGCCCTACTTTGAatgaatgtacatttttatttctttatatatattcttataaatTCATGACAAGGTTCAGGAGAGAACATTTGGCTTTACTTTCTGGAGTACAGATTAAGCCATTCCAATATATGAGGCAGAAAAATTTgtggaaattaaatattttcactcatagtgctttttttttttattctcatgcacacatgtaaaatgaTGTTAATTCTCTAGTTTGTCTTTCAAGACGTGTGCTGTATTACTTTTTATAATGTGTTGACATGTAGATGATCAGAATGTAGACAGTACAAATAGGTTTTTTACTTATAATATTTCATCTTGTCATTAACTTGGACTTGATACCTTTTACTGGCTTGACCACTTTCTGTTTTATGTCAGTATGTTGTGATTGTTA

Function

symbol description
ankrd46b Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human ANKRD46 (ankyrin repeat domain 46).
ankrd46 Predicted to be integral component of membrane.

NR:

description
Ankyrin repeat domain-containing protein 46

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935907.2 True 1541 mRNA 0.43 4 13882312 13889584

Neighbor

gene id symbol gene type direction distance location
col4a6 col4a6,LOC108267418 coding upstream 1638 13798180 ~ 13880674 (+)
LOC113540276 LOC108267420 coding upstream 143402 13724314 ~ 13738910 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding upstream 182622 13692777 ~ 13699690 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding upstream 197713 13647181 ~ 13684599 (+)
nhsl2 nhsl2 coding upstream 236328 13573634 ~ 13645984 (+)
LOC113539767 t185a,tmem185a coding downstream 1529 13891113 ~ 13898505 (+)
m1ap m1ap coding downstream 84412 13973996 ~ 14016125 (+)
nagk nagk,LOC107697250 coding downstream 145623 14035207 ~ 14039607 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding downstream 174910 14064494 ~ 14080036 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding downstream 202910 14092494 ~ 14151289 (+)
G64025 NA non-coding upstream 122561 13755544 ~ 13759751 (+)
G63973 NA non-coding upstream 134240 13695649 ~ 13748072 (+)
G63976 NA non-coding upstream 309479 13570002 ~ 13572833 (+)
G63936 NA non-coding upstream 377593 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 414586 13459362 ~ 13467726 (+)
G64049 NA non-coding downstream 13857 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 122514 14012098 ~ 14012315 (+)
G64103 NA non-coding downstream 123635 14013219 ~ 14013418 (+)
G64105 NA non-coding downstream 127702 14017286 ~ 14017669 (+)
G64095 NA non-coding downstream 152384 14041968 ~ 14042414 (+)
gc2 LOC108267421,LOC108412585 other upstream 162858 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 320046 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 407275 13468552 ~ 13475037 (+)
G63903 NA other upstream 463616 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 596478 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 366160 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 742446 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2133610 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2420629 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2478372 16367956 ~ 16370957 (+)

Expression


Co-expression Network