tcea1 (tcea1)


Basic Information

Item Value
gene id tcea1
gene name tcea1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22670489 ~ 22677200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935915.2
TGCCTTAAGAGACGTAAACACATCTCCTTCCTGCCTGCGCTGCTCGGCGGGCCGCCGGTGGGCTTGTGCTAGACGCGAAAGATTAGTCGTTTTAAACCCGCTTCTGCTTCATTATTAGTGAATAAATCTTCACCATGGGCaagaaggaagaggaagaggttATTAGGATCGCGAAGAAGATTGATAAACTGGCACAGAAGAAAAACGGGTCAGGGGCTTTGGATCTTCTCAAGGAACTGAAGAACGTGCCCATGACTTTGGAGTTGCTTCAGTCGACCAGGATCGGGATGTCTGTGAACGCTATCCGCAAGCAAAgcacagatgaggaggtgacaTCGCTGGCTAAATCTCTTATCAAGTCCTGGAAGAAGCTTCTGGATGAGCCTGCTGGTGGAGATAAAACCactgaggagaaaaagaaggagcCTGCAGCACCGGTCATGTCCCAATCACAGGGTAGCCCTGAGCCCAGAGAGGAAAGCTCCAGCAGTAATTCAAGCAGTAAGAGCGAGGCTGTTGATATGATGCCCACCACCCACACATCAGCGTTCCCTCGAGCACCAGGAACGTCCGACTCGGTGCGCCTTAAGTGCAGGGAGATGCTGTCCAGCGCTCTGCAGACTGGAGATGACCATATCACCATCGGGGCCGACTGCGATGAACTCGGAGCCCAGATTGAGGAATGCATCTTCCTGGAGTTCAAAAACACCGACATGAAATATAAGAACCGCGTCCGAAGCCGAATCTCGAACCTTAAGGATATGAAGAACCCCAACTTGAGGAGGAATGTTCTTTGTGGCAACGTGCCTCCAGATCGCATCGCCAAAATGACCGCAGAGGAAATGGCCAGTGATGAACTGAAGGAGATGCGCAAGAATATGACCAAAGAAGCTATCAGGGACCACCAGATGGCCAAGACTGGAGGCACCCAGACTGATCTGTTCACCTGCGGGAGATGCAAAAAGAATAAGTGCACCTACACACAGGTTCAGACTAGAAGTGCTGACGAGCCCATGACCACATTTGTCTTCTGCAATGAATGCGGCAATAGATGGAAgTTCTGCTGAAAATGGAGCGGGTGTCGTCAGTGCAGAGAAGTGGCTAAATTCCTGGACCATGACTTCGTATCATCAGCTGATAGGAACTTTTAGGTTTTTTTGGCCTCCATCGTACCACGGCGGCTATGGACACCATCAATGTTTTTATCATTGTTTTGGTGTGGATCAAAACAATGTCCTGTGTTTTAACTTGACGTATAGCTAGGCTCAGCCTTTGGACTATGATCAGTGTCGTTTCTTTGTTCTTCCTTTAACATCAGGTTTTTATATGTAGTTTAATGGAAGTATTTTTCACAACATTCACATGTAGAAAGTTATACCTTGCCCTAATGGAAATTACCAGTAGTTAGGCCATCTAATATTCTTAGACTATTTTAcccaataaattaaaaactattaaGGCTTTTAAATTTAAGATGTTGATTTCTTTTAGCTtgacacattttcaaaataagCTAGACATAAGAAGACCCTTCCCActtttattgatatttatatgCATGATTGGCAAATTtctactgtttacatttttttttcttttcaggagtaaaacatttttccaaGACTTACAA

Function

symbol description
tcea1 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Orthologous to human TCEA1 (transcription elongation factor A1).

NR:

description
transcription elongation factor A protein 1-like isoform X2

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935915.2 True 1630 mRNA 0.45 10 22670489 22677200

Neighbor

gene id symbol gene type direction distance location
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding upstream 24051 22641742 ~ 22646438 (+)
ankrd33bb LOC108268146 coding upstream 125902 22538818 ~ 22544587 (+)
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding upstream 144723 22504804 ~ 22525766 (+)
atpsckmt fam173b coding upstream 168628 22497558 ~ 22501861 (+)
LOC113539999 LOC108267232,LOC108440662 coding upstream 175379 22484285 ~ 22495110 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 25779 22702979 ~ 22737767 (+)
oprk1 oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938 coding downstream 72665 22749865 ~ 22757329 (+)
chmp5a chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917 coding downstream 89063 22766263 ~ 22769071 (+)
bag1 bag1,LOC107746903,LOC106569734 coding downstream 93773 22770973 ~ 22774754 (+)
myom1a LOC108268132,LOC108440660,LOC107664077,LOC107732591,LOC107556630 coding downstream 99439 22776639 ~ 22805934 (+)
G68999 NA non-coding upstream 142933 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 273388 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 282744 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 425664 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 752713 21914806 ~ 21917776 (+)
LOC113540593 NA non-coding downstream 249610 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 324798 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 607354 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 614210 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 653833 23331033 ~ 23331529 (+)
LOC113540463 NA other upstream 18042 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 908188 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1030332 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1346522 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1636736 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 641304 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1350906 24028106 ~ 24106223 (+)
G69971 NA other downstream 1431595 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2181826 24859026 ~ 24871263 (+)
tnr tnr other downstream 3030627 25707827 ~ 25881110 (+)

Expression


Co-expression Network