bcl6ab (LOC108268038)


Basic Information

Item Value
gene id bcl6ab
gene name LOC108268038
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27421285 ~ 27426694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935918.2
AGTCCGGTGGTGGAATTCCGAGAAGTGAGAGCTGAGCCTTCACAGAAGTTCAGATTCCAGGAACTGCTGAAGGACGGATTTCTAAGAAAAACATACCAGAGTGTTAGCATGAGCAGCGCAGCAGACGGCTGCATCCAGTTCACCCGGCATGCAGGTGACGTGCTGTTCAACTTCAACCGCCTGCGCAGCCGAAATATCCTCACTGACGTCACCGTGCGGGTCGGGGGCCGAGAGTTTCACGCACACAAGACCGTCCTCATGGCCTGCAGTGGCTTCTTTTACACCATCTTCATCAACACCCACAAAACCGAACCAGCGGTGGTTAGCTTGGACACTAAGGCCGACCCTGAAGGCTTTGCCATCCTGCTGGAGTTCATGTACACTTCCTGCCTAACCCTAAAAGAGCGCTTCATCGTGGCCACGCTCAACACGGCCATCTACCTGCAGATGGAACACATGGTGGAAACCTGCCAGCGCTTCATGGAGTCCAGGGGTTTGAGTGTGAAGCAGCTGCAAGGGGAACCACCAGCTGGCTCCGCCCTTTTACCTCAGGACATGCCCGTTGACCTCCGTGACCTCACTCCTCCTGCAGTGCACTATGCAGTCAGCACTTCTCCTAGCAACCTGACTAGCATCTACAGCCACCTTCCTCCTCGCCCTCTTCCGACGGGTTCCGTCTCAAACGCCAAACTGCTTCCCTGGGAAATTCCGAAAGACAGCCAAGCCGTAACTCACGGGCTAGGTTCCAATCCAGGAGGAAGTCGAGGCAAGCATTTGAGTATGGACCCTGCCATCCATCTGGATCGGAGTGCGAAAATGGAGGAAGCTGAGGTAGAGAACTCTCCTCACATGGTCAATCCTCGCAGCCCTCTGAAGTCGGACTGCCAGCCGAATTCTCCAGCTGAGTCGAGCGGCTGCAGTCGAGAAGCCGCGTCTCCTCCGAAAGTGCGCAACTGGAAGAAGTACAAGTTTATCGTGCTCAACTCGGCTGAAGGAGATGAGAATCCGCTCTGGAATTCCAACCGATCCATGGAGAAATGCAGCGAGACAGCGACGAAGCAGACGCCTGTGTCCATGTCCATCCACGCTGTGAGACAGGAGAGCAATGTGAACAGCGCCGAGACGAAGACTGAGAGCAGTGATCTAACCTGCAGTGAATGGGACAAAATGGAGAATGATTCCGAGAACCATCAGTGTCTCCATGACGCCAAACCGTACGACTGTGACCTTCACAGAACCTCCTTCACCTCCAACCACAACCTCGCTAACCACAAATCTGTCTCTCCAGGTGAGAAGCCGTAccgctgcagtgtgtgtggcgCTCAGTTCAACCGGCCGGCCAACCTGAAGACTCACCTGCGCATCCACTCGGGCGAGAAACCGTACAAGTGCGAGACGTGTGGCTCCGCCTTCGTCCAGGTGGCTCACCTGCGTGCTCACGTGCTGATCCACACCGGCGAGAAACCTTACTGCTGCTCCGTGTGCAACACGCGCTTCCGCCATCTACAGACGCTCAAAAGTCACCTGCGCATCCACACTGGCGAGAAGCCCTACCACTGTGAGAATTGTGATCTACGTTTTAGACATAAGAGTCAGCTCCGCTTGCACCTGAGACAGAAACACGGCGCCGTGACCAACATCAAGATCTCCAACCGCTGAAACACTGAcacagcaatacacacacacacacacacactcaaatacagtGGTACATGTACTGTGGTGTTTAAATGTCTGAGTCCACTACCAATCACTTATCACAAAACTAACATAAGATTATAATTCACAATATCTGTATATAATATGACTGTGGGGAAAtactccaatctgattggtccgtCGAGGTATTCAGGCGTGTGTTGTATTTCTAAACCTGAGCCGTTCACTGTATGTAAGTCGGCTCCCGTTGCTTTAAACGCAAATGTTTCTTTAACACTGGAATGCAGATAAGCGCTGACTCTATTTActttaaattagctagctaattttgtacaagtataaaatatatagacaaaaaaagatattacttaaattataaaaatatttaaattgctGAATAGTCTAATATAACTTATAGAGCACTTATCAGTATTATGTCTTAGTTAATGTTTGATAAGTGATTGGTAGTACcctcagacttttttttttttttgcattttttttgcatttttctcaaGTATACAGTCATATAATGGATaagaatgtttatgtttatatgatattataaaGAACAGTTATTTTTGCACTTGTTGAACATGGTACATACGAGGTActtaaaaaattacatgaatATATAtccaaaaaaatttatttatagatgttTTATAGCTTTTTATGTACAGCATTTTGATATGAAAATAAGTGGAGATGGAtgttgtaataaaatatttcagataaaatgtt

Function

NR:

description
PREDICTED: B-cell lymphoma 6 protein-like

GO: NA

KEGG:

id description
K09231 KR; krueppel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935918.2 True 2403 mRNA 0.47 9 27421285 27426694

Neighbor

gene id symbol gene type direction distance location
tctex1d1 tctex1d1 coding upstream 8505 27410223 ~ 27412780 (+)
pde4bb pde4bb,LOC108267485,LOC108430746,LOC107681771,LOC107719260,LOC107593782,LOC107671696,LOC107559365 coding upstream 50254 27325751 ~ 27371031 (+)
LOC113540484 leprot,LOC108430744 coding upstream 103273 27313077 ~ 27318012 (+)
LOC113539841 LOC108267486,LOC107719261,LOC107593886,LOC107671769,LOC107559363,LOC107754779 coding upstream 134631 27274172 ~ 27286654 (+)
LOC113539951 LOC108267487 coding upstream 150491 27265570 ~ 27270794 (+)
fam78ba LOC108267646,LOC108430701,LOC103149501,LOC101155797,LOC105925252,LOC103479089,LOC101481240 coding downstream 14815 27441509 ~ 27447248 (+)
imp3 imp3,LOC107671714 coding downstream 33574 27460268 ~ 27466505 (+)
zgc:55943 c7h1orf21,zgc:55943,LOC108430752,LOC103042176,LOC107709356,LOC107671715,LOC107559369,LOC107593773 coding downstream 41354 27468048 ~ 27477673 (+)
trnat-ugu_5 NA coding downstream 62559 27489253 ~ 27489325 (+)
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding downstream 69154 27495848 ~ 27508199 (+)
G71980 NA non-coding upstream 40213 27380848 ~ 27381072 (+)
G71977 NA non-coding upstream 49607 27371473 ~ 27371678 (+)
G71942 NA non-coding upstream 125921 27293356 ~ 27295364 (+)
G71939 NA non-coding upstream 131580 27287173 ~ 27289705 (+)
G71941 NA non-coding upstream 136822 27284060 ~ 27284463 (+)
G72005 NA non-coding downstream 1725 27428419 ~ 27429222 (+)
G72012 NA non-coding downstream 32976 27459670 ~ 27460197 (+)
LOC113540179 NA non-coding downstream 57126 27483820 ~ 27487711 (+)
G72118 NA non-coding downstream 126433 27553127 ~ 27555706 (+)
LOC113540592 NA non-coding downstream 129391 27556085 ~ 27559427 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 14887 27384807 ~ 27406398 (+)
gng7 NA other upstream 539815 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1045459 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1128501 26288290 ~ 26292784 (+)
G71385 NA other upstream 1192094 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 876157 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 889710 28316404 ~ 28338173 (+)
gng5 NA other downstream 1331851 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1366153 28792847 ~ 28797159 (+)
G72873 NA other downstream 1447662 28874356 ~ 28912104 (+)

Expression


Co-expression Network