otulinb (LOC108268091)


Basic Information

Item Value
gene id otulinb
gene name LOC108268091
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23594961 ~ 23608201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935925.2
ACTGCGCATGCTCCAGCTCCAAGGTCTCTACCTGAGCAGTCTGGCTCTAATATTCCCAAAATGGCGACTTCCATTTCGACCAAAAAGGCTTCAAACCGGCACAGTGGGAGTAAATGGCCCATAATGTCCACTCATACATATATACCGTCACTGACTGCGATTTAAAAAAGGCTTCAAAACCGCACACTGCGAGTAAATGGCGCTATACTCTGTCGTTGGTAGTAACCGTTTGTGGAAACTACAATTCCCAACATCCCctataaacaggaagtgactgtTTCTGCGGAGATTAGATTAGCAGGCTGTCCCTAACTTTAATTTACGTATTAGCTTTCGTGGACACTTAACTTAGAagctgCTGTTTGTGGAGGTGTGGGAGAGATGCTGTGTGCTCTGCAACATGCGTCCCACTGAGCCAGCTGCCAAAGATGGACGCAGTCGCAAGACTAACAAACCCAGAAACACTCGGGGAACTGTAAACCACTGTCCCGAGTCTCCTGAGTCCTGCAGCGAGAGCAAAAAATCCAAGAAAGTAGGACAATCTCTCAAGAAGCCCAGTCAAACTGTTCCAGCTGCTGCCAGTGAAAAGGATGCTCATCCATCTAAACATGGAAAAAGCAGAGAGATGACTTCCAATATGCAAGCAGCTCCTGAAGAAGAAGCCAAGTCTTCAAATCAAGATAGTCATCTGTGCAAGCAGCGTCCACAGGAGATGTCAGCAGCAGAGAGTGATAACAGTGAGGAGGATCTGTACAGGGCAGCAGAGGAAATAGAACAGGAAAGACAGGAGAAGCAGCTGTCAAATGCAGctTCAGTGTCTAATTCTGACGACCAGAGCAGCGTGTCAGCTCCTGAGGGTCTGctctcctacagtcagagagaATGGAAAGGAAACACTACCTTCAGCCACCTTATCAGAAAGGGGTATGAAGCAATAGCTCAGAAGTTTGAGAGTCTGCGCAGAGTACGAGGTGATAACTACTGCGCTCTGAGGGCGACCCTCTTTCAGCTCTTCAGCCAATCTAACAAAGTCAGTAACTGGCTGCATGATGCTGAAATTGTTCAGCTGCACTGTGTGCAAGATTTAGTGGAAGAATGGAGGTTTCCTTTTGGGAGCAGAGATGAAGGAGGAGCAGTGGAACAGCTGGAACATTGTCTGAAGCGCCTGAGAGTCAGGTGGCAGGAGGCAGTGCAGTGTGAGAGTCCAGCAGCACGGGAACGGGTTTGCCGGCAACTGTTTGTAGGGGGCCGTGAAGAATATGAGCTACTGGAGGCCCTGAAGTTCTTGATGCTGAAGACGGTCATTCAGCTGCACTCTGACATGAAAAAGGGTTCTAGTGTGCCTGAGTTCTGCTGGCTTCTTTTTGCCCGTGACACCTCCAAATGTCCCAGGAGCTTCCTCACTAATCATCTCAGACATGTGGGCTTCAGCGGAGGTCTGGAACAGGTGGAGATGTTTCTGCTGGGCTACTCCCTACAGCATACACTTCAGGCCTTTCGGCTCTACAAGACAGATACTGAGGAGTTCATCACCTACTACCCAGATGACCACAGGACAGAGTGGCCTTGCCTTAGCCTGGTCACAGAGGATGATCGACACTATAACGTGCCAGTGCCTAAACAGTCCGATCTACAATCAGCAAAACATGACAGGTCGATCAGGCCCAAATGGAACGTGCCTTCAAGTGGAACAAGAAAAACTACACTTCTATAGAGAAAATCTGATGACACTGAAAGACACCCTCCAAAGGTCTGGGGGCTTCATTATGTTAGGTGATTTTCAGCCACAGACCTCCCAACCTTTACGCATTTTGCATAACATTGGCGTGGGCTAAGCAgtcatcgtttttttttttccttccaatAAAAACGACAGATGATCCAATCAACATATGAATCtagaatgactgacagttgttttgaactctccaatattGGCTGACACCCTGGAAGGCCCACCCCTTCCCCTTATCTCACATTAGTCATCTAACTCCTCTTGATTTTTGTCATTTGAAAGAGCACTGGTGCAAGGccctcactttctgtcaaggtaaaggGAGAGCATTTTCacttcattaatgtgaaataaaaatctattaacgtacagtactgtgcaaaagtcttaggcaccctttttttttttagtacaaatttgttaaatgttacagaaaagtgtttgtatgtcagtaaagaaagcatgAAAGGCCTTACATGAAAggccacttttcagacaaaaaacataatgaaggctgctgggttttgctgcaaaaataagaagcaagtgttactgtcaaagtctccagaagaactgtggctgcttctgcaag

Function

NR:

description
PREDICTED: ubiquitin thioesterase otulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935925.2 True 2327 mRNA 0.46 9 23594961 23608201

Neighbor

gene id symbol gene type direction distance location
stard3nl stard3nl,LOC107713985 coding upstream 193231 23392658 ~ 23401730 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 203960 23387009 ~ 23391001 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 218776 23353969 ~ 23376185 (+)
rnf182 rnf182 coding upstream 245334 23345058 ~ 23349627 (+)
ackr4a LOC108267630 coding upstream 318160 23273523 ~ 23276801 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding downstream 6239 23614440 ~ 23641469 (+)
mycb LOC108268289 coding downstream 40070 23648271 ~ 23650633 (+)
LOC113540051 NA coding downstream 405655 24013856 ~ 24016743 (+)
LOC113540619 NA coding downstream 412864 24021065 ~ 24024165 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding downstream 513352 24121553 ~ 24127236 (+)
G69570 NA non-coding upstream 137755 23447463 ~ 23457206 (+)
G69522 NA non-coding upstream 226284 23367661 ~ 23368677 (+)
G69514 NA non-coding upstream 263432 23331033 ~ 23331529 (+)
G69449 NA non-coding upstream 302963 23291410 ~ 23291998 (+)
G69443 NA non-coding upstream 310035 23284554 ~ 23284926 (+)
G69641 NA non-coding downstream 2752 23610953 ~ 23611157 (+)
LOC117597085 NA non-coding downstream 46721 23654922 ~ 23767863 (+)
G69722 NA non-coding downstream 150183 23758384 ~ 23774271 (+)
G69735 NA non-coding downstream 238444 23846645 ~ 23849514 (+)
G69736 NA non-coding downstream 246874 23855075 ~ 23857571 (+)
G69509 LOC108267411 other upstream 274618 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 942514 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1832660 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1954804 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2270994 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 419905 24028106 ~ 24106223 (+)
G69971 NA other downstream 500594 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1250825 24859026 ~ 24871263 (+)
tnr tnr other downstream 2099626 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 2288816 25897017 ~ 25902006 (+)

Expression


Co-expression Network