tmem53 (tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452)


Basic Information

Item Value
gene id tmem53
gene name tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24178967 ~ 24183754 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935937.2
GGGATTGAGCCTGAGACGTGAACCGGAAGTGTAAAGGAAAATTCTGTCACTGTGGGTCTGTGGATCAGAGAGGTCGGAGTGAAGCTGAGGCTcgttttcatatttcatattgatGGCAGTCAGAGAGAGTCGAGAGGGATAATAAAGCTTCTCAATATGGGAGATGATGGCATGGACTACAACATAGTTTTTCCGGAGCCCGAGGTCTCAGAGAAATACTGGTGCAGATCGAAGCAACCAGTCGTTATCCTTTTAGGCTGGGCTGGCTGTCGAGACAAGCATCTCTCAAAGTACAGCTCGATTTATAACGAACAGggaTGTGTAACTGTCCGCTACACAGCCCCCTTGAAGACGGTGTTCATCTCCGAATCATTTGGCTACAAGGAGCTCCGCAGCACAGCACACAAACTGCTTGAAATCCTGTACGACTACGAGGTGGAGAACAACCCGATCTTCTTCCATGTGTTCAGCAATGGTGGCTTCATGCTCTACCGCTACATGGTGGAGCTCCTGCAAAGCCACAAGCAGTTCAGCTCACTCTATGTGGTGGGTTCAGTGCTGGACAGTGCGCCCGGGAGCCAGAACGTCATCGGCGCCGTACGTGCTCTCAAAACCACGCTGGGCACAAAAGTCAACGTCCTGCTGCGCTGTCTTCTCTTGACTCTGTTCGCTGTGAGTGTGGTCCTGCTCAGAGTCGTCTTATACCCTGTGACCAAACACTTCCACAAGAACCACTATGACGCCATGATGGAGCGTCCGGCGCCTTGGCCTCAGATGTACCTCTACTCCAGAGCAGACCGAGTGATCAGGTATAGAGACGTCGAGAAGATGGTTAAATCACTGCAGGAGAAAGGGGTGCACGTGGAGAGCTTCGACTTCATCACACCGGCTCATGTGAGTCTGTTCCGAGACTGTCCGGAAGATTATTCGAACAGGTGCCGGACTTTCCTGAAGAGCTGCATGACTAACTCTGAGGAGACGTTAATGAAGAAACGCCTGTGAACGTGTAACACTGATTGTATGATAGGGTCGGGCGATATGGCAAAAAAAGATACGACTTCAAGATATTGTCATGATGCGTAATATGTATCACGATACTTAAGCGCCAGCAAAATAGTAAAGCAGTTTAAAAAACGTGATTTCAGTGATAaatttctttctagaaattaaattaacatgGAAAAGGAAGAACAAATGAAACGttcattaacaaaataaatgatgataTCCTGTTAGCTACTGATTACTGTTATTAACCTTGGAGCTGGTCAGTGTTAGAAAAATTTAGCACAATATCTAAGAAAATTGTATTTTTCCTGTAATTTATGACAATATTGATAGTGTATCGTCATATTGCCCAGACCTACCATATTGTGTtcttacttaatattttaagtGATCTGAAACTACtgtaatgtgtataaaatcCCTAACCCTCTGTGTAAATAGTACTGTTTGACCTAATATAAGTTTGTATAAGGTTAGACTGAAGTGTTTCAGTCGGTATTTGTCTGGTAATGTGAATTGAAAGCTTTTAatttaagattattttaaatctaCTAAACATCCTCGACCTGTTTATAACTTATGTGCCTTCCTGAAATAAAGACTCATTTCATTGGACTAATCA

Function

symbol description
tmem53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM53 (transmembrane protein 53).

NR:

description
transmembrane protein 53 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935937.2 True 1630 mRNA 0.43 3 24178967 24183754

Neighbor

gene id symbol gene type direction distance location
opn4.1 opn4m2 coding upstream 2213 24175258 ~ 24176754 (+)
LOC113540614 NA coding upstream 4460 24170646 ~ 24174507 (+)
si:dkey-154p10.3 LOC108267397,LOC107736657 coding upstream 8500 24161778 ~ 24170467 (+)
LOC113540392 NA coding upstream 29999 24145082 ~ 24148968 (+)
ccr9a LOC108267400 coding upstream 42159 24134676 ~ 24136808 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding downstream 110882 24294636 ~ 24409297 (+)
klf17 LOC108267392 coding downstream 292435 24476189 ~ 24478804 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding downstream 323451 24507205 ~ 24561278 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding downstream 403453 24587207 ~ 24597109 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding downstream 608541 24792295 ~ 24807404 (+)
G69987 NA non-coding upstream 40079 24138635 ~ 24138888 (+)
G69966 NA non-coding upstream 94749 24083606 ~ 24084218 (+)
G69946 NA non-coding upstream 169107 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 235895 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 256271 23921800 ~ 23922696 (+)
G70129 ccdc24 non-coding downstream 382491 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 383246 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 386894 24570648 ~ 24570850 (+)
G70138 NA non-coding downstream 390582 24574336 ~ 24574570 (+)
G70139 NA non-coding downstream 399422 24583176 ~ 24583376 (+)
G69971 NA other upstream 69078 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 72744 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 858624 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1526520 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2416666 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 675272 24859026 ~ 24871263 (+)
tnr tnr other downstream 1524073 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1713263 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 2032310 26216064 ~ 26224038 (+)
G71385 NA other downstream 2045010 26228764 ~ 26229191 (+)

Expression


Co-expression Network