zgc:92429 (zgc:92429,LOC108267498,LOC103044742,LOC108434854)


Basic Information

Item Value
gene id zgc:92429
gene name zgc:92429,LOC108267498,LOC103044742,LOC108434854
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11707459 ~ 11716739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935954.2
GTATTATAACTAATTTGTAAGACAATTAACggtgttttcttcacttttAGATGTTCATATTGTTCCTTTGAGATACTTGTTCATCTTTTTGCTCTGACATAGAAGCAGTGATCCCCAATATGATGATATCTTTTCACAGTTCTGTCAGACTCTTCCactttatcaaaataaaatgtaatgctttttaattcttttaaataatgaaattactTAAATACCTTTTCTCAGTCTGTGCTCCTGctctgtgtcagtgtgaggTGCTCAGCTCTCCTGCTCCGGATATCAGGAATGTCAGCCTCTTCAGATAAAACCCAACAGCTGCAAGCCTCCTGACTATTTATAACTTTCATTCAggctgtcctctctctctctctggctctctctctctctctctctctctctctctctctctctctctctctctctctctcttctctctctctctcttctcacgTTTCTTgtcctctctctgcctctctgatTTCTGTCGCTTTTCTGGATCACTCCTTCTTCATAACTGAAAGTTCTGGAGAGTGAAGAAGGCAACAGGAGGAGTGTTTAAGAGTCTGTGACAAACCAGGAGAGGACCAGAAGAACAACTGTTTAATAAAAGAGGAGTTCTGAAAAGAAACTAAGTGCAAATCAGACCAGAATGGCTTCGCTGTGTTATAACAGAGGCTGTGGCGAAAGGTTTGATGAGGATAAGAACTCGGATGATGCCTGTTGTTTTCACCCTGGAGTGCCTATCTTCCACGATGCCCTGAAGGGCTGGTCCTGCTGTAAGAAGAGAACGACCGACTTCTCAGAGTTTCTCTCAATCAAGGGTTGTTCCTGTGGACGCCACAGTAATGTGAAGCCTGAAGAACCGCTGAAGCCAGAGTTTAAGTCTGAAAAAGGAGAGCAGAAGCCCAACAACAGCAAGGAGATCATCTACCAGGGCCCTAAATCTGCTGAGGctctggagaaagagagacccagCTCTGATGAGCCGATGTCCAAGCTGAAAGTGAAGGTGTCTCCTTCTCTGGCTCAGATcctggagaaaatggagaacaGTGAGAGGGAGAAGCAGGAGAAGCTCGAGAGCCGAGGTGTCATCGTGGggacaaaatgcaaaaactcAGGATGCAAAACAattTACCAGGGTCCAGAGACAGATGCTGAGGTTTGCACATATCACCCTGGAGCACCAGTCTTTCATGAGGGATACAAATACTGGAGCTGCTGCTGCATAAAGACCATCGACTTTAACGCTTTCCTGGATCAAAAGGGCTGTACTACAGGCAAACACTGCTGGGTCCAGAAACAGGATAAGAAGAAGGTGGCATGTCGACATGACTGGCACCAGACGGGCAACCAGGTGGTGGTCACCATCTATGCCAAGAACGCCAACCCTGAGCAGTCCTATGTGGAGGCCAACCGCACAGTGCTGACGTGTCATATTCAGTTTGAGAACAACAAGGAGTTTCACAAGGACTTCCATCTGTGGGGGGTAGTTGATGTGAAGAGCAGCTTGGTGAACATGGTGCCTTCTAAAGTAGAAGTGACCTTAAAGAAGGCCGACGCTGTAGCGTGGGGTAAACTGGAGGACTCCAAACACAAACCTGAACCTGAGGTCACAGAAGACAGCACCACAGAGCAGGAGACGAAAGCAGATGAAAAACCGGATTGGTACATCTCAGATGATGACATCAGTGAGTCAGActgggaggaggaggacgacAATAATGACGATAAGAAAGGGGAAGAGCAGGATGTGGACGGTCCCCCCTTGCTGGAGGAACCCAAAGCTGTACCTCCAAAGCAATAGAGGCCGATTAATATTCACATAGAGATTGTTTTTATACAGTGTGACAGTAGGGGTTGGATGGGCATGATGGTGTATTGTGAAAAGTTAGTTTGAATTAATTACATGGTTATCATTGCAATATAATGATCCAAATAATGATTTAAACAAATTATTCTCAGGTACtgcacatttctgcatttttttaaaagatgatgGTCACCAAAAATACCataactgtacattttttaaattttccgaGCCACCCAGGAGTTGGTTAtggttcctataacagcacgttctgaagtggtttattcctcatataccagagcaatttgccaactattacaattattatttcttaatgGACGTTGTCATGTATTTTATCCCGATACTTGCATTTAAAATTCTTGAATGCCAAAGAggcaagttacttcctgttttcacttacattgtaacaactataaacagtcgttccatca

Function

symbol description
zgc:92429 Predicted to enable zinc ion binding activity. Predicted to be involved in centrosome duplication. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human ITGB1BP2 (integrin subunit beta 1 binding protein 2).

NR:

description
cysteine and histidine-rich domain-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K13458 RAR1; disease resistance protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935954.2 True 2268 mRNA 0.44 11 11707459 11716739

Neighbor

gene id symbol gene type direction distance location
zgc:162171 LOC108267158 coding upstream 69889 11631976 ~ 11637570 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding upstream 87782 11613768 ~ 11619677 (+)
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding upstream 125037 11467950 ~ 11582422 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding upstream 244712 11453930 ~ 11462747 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding upstream 262274 11440088 ~ 11445185 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding downstream 102027 11818766 ~ 11824148 (+)
si:dkey-171c9.3 LOC108268329 coding downstream 369440 12086179 ~ 12093053 (+)
tnfsf10l LOC108268320,LOC108410411,LOC103041464,LOC107691962,LOC107562848,LOC107742295,LOC107753950 coding downstream 383066 12099805 ~ 12122603 (+)
tifa tifa,LOC100304890 coding downstream 481603 12198342 ~ 12206875 (+)
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding downstream 792135 12508874 ~ 12670541 (+)
G62654 NA non-coding upstream 31764 11675313 ~ 11675695 (+)
G62640 NA non-coding upstream 96402 11610836 ~ 11611057 (+)
G62639 NA non-coding upstream 98190 11608756 ~ 11609269 (+)
LOC117596988 NA non-coding upstream 242853 11463083 ~ 11464606 (+)
G62618 NA non-coding upstream 269604 11437529 ~ 11437855 (+)
G62932 NA non-coding downstream 145894 11862633 ~ 11863683 (+)
G62967 NA non-coding downstream 196111 11912850 ~ 11913106 (+)
G62983 NA non-coding downstream 218090 11934829 ~ 11937759 (+)
G63061 NA non-coding downstream 287251 12003990 ~ 12004223 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding downstream 531924 12248663 ~ 12249788 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 2123 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 102229 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 1044048 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 1211989 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 1215590 10491797 ~ 10491869 (+)
si:dkey-112a7.4 LOC108268066 other downstream 575752 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1489918 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1558723 13275462 ~ 13285834 (+)
G63903 NA other downstream 1701638 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 1751813 13468552 ~ 13475037 (+)

Expression


Co-expression Network