kcnj10a (kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965)


Basic Information

Item Value
gene id kcnj10a
gene name kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9391003 ~ 9412913 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935959.2
gagttggtgGAGGAAAAGCAGAATTAATGAGTAGAAGAGGTGCTGAGATGGTGAAAACGGGACGGATTTCCATCTCCAATTTGAAACAGTTTGTTTAGAGCCGGAAAGAAACTTCCCGAGAAGTTCAACTACCTgaggacaaacagagagagagagagagagagagagagagagaaagacagacagacagagagagagagagagagagagagagagagagagagagagagacccggTGCATAATAAATCCGTATCATCATCCAACCAGCAGCGGCACCGACTGACACTCGGCTCTGACTCCATCCACTAACCAAACTTCTGCAAACTTTGAAACTTTAAGTTTTTCTGTACAACTATGAGTTTTCTAATTTAACAAAAGATGAAGAGGAAGCGTTAATATTGTTCTAAAGTGGCTTATTTTTGCAGCCTGTGTGGACATGCTGTCTCTGTCAGCTCTTCTCGGCCTCAAACTGCGCTCGGATGTCTCTTCATTCTGACAAACTGGagtagaaacaaacaaacaagcaaacaaacaaacaacaaaacaatttaCGCCTTCACAAACCTGCGATCAAGTAAATCATAAGCCATGACTTCCTccactcctccctcctctcGTAGTCCTTCTCCCCAAAAGGTGTGCCATTCCCAGACTCAGACGGATGTCCTGAAGCCGCTGCTGGGcggaggtggtggaggtgtgGCAGGAGGTGGAGCTGCAGCATTGAGGAGGCGTCGGCGTGTCTTGTCTAAGGATGGCCGAAGCAATGTGCGCATTGAGCATGTCAGTGGCCGTGGCGCTCTCTACCTGCGTGACCTGTGGACCACCTTTCTGGACATGCAGTGGCGCTACAAGCTTTTCCTATTCTCCGCCACCTTTGCTGGGACCTGGTTTGCTTTCGGTGTGCTGTGGTACCTGGTGGCGCTGGTGCACGGAGACCTGCTGGAGTTTGACCCGCCATCCAACCATACCCCCTGCGTGATGCAGGTCCAGACGCTGACTGGTgccttcctcttctctctggAATCACAGACTACAATTGGCTACGGCTTCCGGTGCATCACAGAGGAATGTCCAGTCGCCATCATCCTTCTCATAGTGCAGCTAGTTATCACAATGGTGATGGAGATCTTCATCACAGGGACCTTTCTTGCCAAGGTGGCTCGGCCGAAAAAGCGTGGTGAAACAGTAAAGTTCAGTCAGCATGCAGTCGTGGCCAATCATGAGGGCCAACCATGCCTTATGATCCGTGTAGCCAACATGCGCAAGAGCCTGCTGCTGGGCTGTCAAGTAACTGGTAAGCTGCTGCAGACGTCTCTGACTAAAGAGGGTGAGACAGTCCGGCTAGACCAGAGGAATGTGGCCTTCCAGGTGGACACGTCCAGTGACAGTCCCTTCCTCATCCTCCCTCTCACCTTCTACCATATCATTGATGACAGCAGCCCGCTCCGCCCTTGGGCTGCCAAGGGTGGAGGTTGGGCAGACCCAGAAATGGCAGATTTTGAACTGCTGGTAATAATGAGTGCCACAGTGGAGCCCACATCAGCCACGTGCCAGGTACGAACCTCCTACCTGCCCGATGAAATCCTGTGGGGCTACGAATTCCCCCCTGTCGTCTCGCTCTCCCCATCAGGGAAATACGTGGCTGACTTCGCCTTCTTCGACAAGGTAGCTAAGACCAAGACCCTGCCATGCTTTACGCAAACCTCCCCTTCTAGCCCAGGCTCAGACAGTGGgcgaagaggaggaggaggaaaggatCCGGAGAAGATGAGGCTGGAGGAGAGCTACAGGGAGGAGAAGGGGCGTGATAGAGGGAGGATACGAGATAGCAGCCCACTTAGCGTCCGCATTAGTAatgtttagagagagagagagaaagagagacagacagacagacagacagacttgttgagagaaagagaatcaGACTAACCATAAGCTACTAGAAGCAGAGGAATCTAAGAAGTTCACAATAAATCCTCTTCAGaagacacatttttcaaatatacacatacactggGACTGCTACGTGTGAACAATGGTATCACCATCTTGTGGCTAAAATTAATAGTCTCACCTGAACACTGGCCTTGTTTCAAtaatgtttgattttctttattgtacTTTCATTTTTATGGCTTGGACTATGacaagattataaaaaaaaatcaaaaggccaaaatatgcaaaaactgatttaaaatagTCATTAGATAATGAAGCACTGTACTGAAGGATCAGGGGTTCTATGTCCTGGGACTTGTCTTTGTATTCCATATTGATGGACTGAACTGGAATgatgttattattttgcatgtgtatatatttgtaccTAACAATGCCAGTTTGAGTACTCATTTGAgtatagatcttttttttttgagtatagGTTTTTTCTAGTCACTGGAGCAAACATATTGATGCAGTATGTTAACAATACTAAAAGCACTTTAACTCTGTAAGAAGATTTCTCTAGTTTCTGTTTTGAAAGCACAACTAACTAGTGAATATCGGATGGTGAATAACTGTCCTGTCATTTCAAGCATGTGTGGGTGTTTCTGTGAATCTGTAGCATGCCTGCTTGGCTTGCTGTAAGGTGTAGGGAAATGGAGGGcgtattttgaacaaaatatttttagaaatgtacaaaatttcTAGACCTacatagatattattattattattattattattattattattattattattattattattattattatcattattattattattattattattatgtgcgACATGGATGTGTTTTCTTCggtattaaaaacaaatgtggtCTGTCCTACTTGTgggaagaaaaatatttttattttaatatatgtgATAGAGCTCAGTTTTAAAAACTGGGAAATTATCACTTTAACGTCTAATGCCTTTAAAtgaccatttttaataaatgatatgTC

Function

symbol description
kcnj10 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within several processes, including adult walking behavior; ion transmembrane transport; and regulation of resting membrane potential. Predicted to be integral component of plasma membrane. Predicted to be part of astrocyte projection and cell body. Predicted to be active in ciliary base and plasma membrane. Implicated in EAST syndrome and autosomal recessive nonsyndromic deafness 4.

NR:

description
PREDICTED: ATP-sensitive inward rectifier potassium channel 10

GO: NA

KEGG:

id description
K05003 KCNJ10, KIR4.1; potassium inwardly-rectifying channel subfamily J member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935959.2 True 2934 mRNA 0.44 6 9391003 9412913

Neighbor

gene id symbol gene type direction distance location
LOC113540032 NA coding downstream 1522 9383985 ~ 9389481 (-)
LOC117597149 NA coding downstream 13991 9368722 ~ 9377012 (-)
LOC113524717 LOC107663573 coding downstream 466066 8917374 ~ 8924937 (-)
LOC113526862 LOC108267289 coding downstream 823015 8564114 ~ 8567988 (-)
LOC117596993 NA coding downstream 829971 8544276 ~ 8561032 (-)
dusp19b dus19 coding upstream 22221 9435134 ~ 9437967 (-)
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding upstream 26437 9439350 ~ 9571464 (-)
LOC113539885 LOC100379168 coding upstream 61264 9474177 ~ 9484601 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 469798 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 479438 9892351 ~ 9896258 (-)
G61518 NA non-coding downstream 77984 9312797 ~ 9313019 (-)
G61496 NA non-coding downstream 231888 9151418 ~ 9159115 (-)
G61492 LOC108267340 non-coding downstream 265695 9120761 ~ 9125308 (-)
LOC117597152 NA non-coding downstream 281038 9107528 ~ 9109965 (-)
G61489 NA non-coding downstream 294129 9088707 ~ 9096874 (-)
G61876 NA non-coding upstream 15881 9428794 ~ 9430832 (-)
G61881 NA non-coding upstream 35602 9448515 ~ 9454706 (-)
LOC117597234 NA non-coding upstream 86806 9499719 ~ 9499931 (-)
LOC117597233 NA non-coding upstream 90149 9503062 ~ 9503274 (-)
LOC117597212 NA non-coding upstream 93531 9506444 ~ 9506654 (-)
G61537 NA other downstream 52258 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 63572 9314849 ~ 9327431 (-)
G61478 NA other downstream 406550 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 795378 8571496 ~ 8595625 (-)
LOC113526822 LOC108268278 other downstream 839148 8452610 ~ 8551855 (-)
G61900 NA other upstream 192814 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 363365 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 657493 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 665775 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 1073755 10486668 ~ 10486741 (-)

Expression


Co-expression Network