agfg2 (LOC108267520,LOC108442826)


Basic Information

Item Value
gene id agfg2
gene name LOC108267520,LOC108442826
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13311880 ~ 13327219 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935975.2
GGAAATTTCCGGATAACACTAGAGATATGCacgtgaaaagaaaacaaaacaagacaaaacaagatCTGGTTAATTATATTAGTGAGTTGTTTTTGGCAGCTAATACATCCTGTTGCTGTTCAGCTTTTCCTGAGGATCTGTGCGCTTCATGCATCGCTGCTTTCCGCACTGAAAGCCCAGATTTCTGTCACCGCTCCAGCAAAGCAGCGTCGTGTCTTCGTGGAAGGACGGGCGGGTTCTCCTGAGCTTCACCATGTAACACGATGGTCATGAGTGCGTGGCAAacgcaagaagaagaagaagaagaagaaaatctcAGGACAGATATGAAGTGGAAAGCGATCATTGCTTTTTAAGGCGCGCGCTAGAAATTGCTTATGGACAGCAATGGATAACTAAATATGCagtagcaaaaaacaaacaaacaaaaaactccaGTGGACAGCTCGGTGACTACGCATCTGAAATATGCATGTGAGATCCCTGAGATAAATCGTCTGAAGATTATGCAGTCGCAGAGTGGCTTGTATAAGGCGGACCTGAGAAACGCAGAGGAGTAAAGCGAAGGAGGAACTGAGTGCAGTCTAACGGAGCGCCACTTCACGTCTCCCTGCTGCAGACTCGACATCCCTGACAGGCggtgtatatctatatatatctatatatgtatatgtgtgtgtgagagagagtgtgtgtgcaaccAACGCACGAGCATGTCGAACCGAAAGCACCGGGACAACCAGGAGATTTGCGCCCGCAAGGTCCGCGAGCTCGCGCAAACAGGGCCCAATAAACACTGCTTCGAGTGCGGCCAGCCTGGTGTGACTTACACCGATATCACCGTGGGCTGCTTCGTTTGCACATCATGCTCCGGAATGCTGAGAGGGCTCAACCCGCCCCACAGGGTCAAATCCATTTCCATGACAACCTTTTCCCAACAGGAAGTAGAGTTTTTGCAAAACCATGGCAACGAGGTTGGGAAAAGGATGTGGCTCTGTACGTTCGACCCAAAGACTGATGGCTCTTTTGACACATGTGACTCACAGAAGTTTAAAGAATTTCTTCAGGATAAGTATGAGAGGAAGAAATGGCATTTCTCTAAGAGTAAAGGAAGGAGGGATGTAGAGGCTCCATGGAGTACAGGAGTTCAAGCTCCTGCTCAGACTCAGCCTCCTTCTGGAAACCCAATGAACCCTGCAGCCCGGCCTTCACGTGCTCTGtCCCAGGCTCAGGTGCCGTCATGGGATAGAGTTCCAGCTGTGTCTCCAGCTGATGTTCGTACAGAGGTTTTCACAGCTCGACCCACTCGATCTCAGAGCTTCAGAGACCACACTATTAAAGaTTCCTTGTTAAGTGGGATGGAGAGGCAGAGACCAGGAACTATTTCTCCAGGAATGGGACCCCAGAGTCGCCTTCCCTCTTTCCCTGCCCTTCCACGCCCTTCAGCAAGTAGCACTTTCAAAAACAGCTTCACACTAGGTCGCACGGTATCCTCAGGAGGCGGAGCACCATTTAGGACTGTCCCTAAATCTCTAAGTTTGGACTTTGGAGGTCTTGGTTCAACCCCTAGTGCACTAAGCCCTCAGGCTCCACCACTTGTCTCCCAGGACAGGTATGCTGCCGTGTCTCAACTCGACAAGGCCTTTTCTGACAACACGCCCACCACAGTTGCATCCACAACTCCCTCTAGTGGCCCTCCACAATACAGCACCCTGTTTGGCAACAGACTCTCTTCTAGTTCCACACCTGCAAGTTCTCCAGGTGTGCCAGAGGTCACTGCAGCCTCTCAGACATTTGCAAATTTCCCAAACCCCTTCTCTTCTACAGCCAGCAGTTCACAGCCTGCTTTATCCCCCAGTAACCCCTTCAACAGCACAGCCACAGGTGACAGCAATACACTTGTGTCACCCTCTCCTTCAGCTGCCTTCCCTCACTCAGCCTCCTTTCCtgctcccacctcccagaatgCTTTTCCTCATGAGCCAGCTAATAATCAGGAGACAAATGGTTTCACGTCTATCCCTGCACTGGAGTCCACATCCAAAGTCCAGCGGCCGATGTCTGTCAACCCATTTACTGGGACGGTTTACCCCACCAGAGGAACGTCACTGAACCCCTTCATCTGATTCCACCATCCCtttgaggagagagagagagagagagagagagagagagagagggttgtGGGTGtatgtgaaagagagacagagagcttgATGCCATTTCCATGACTTGAGGAAACTCCCTCCATCAGATAAGGgagataaacacacatggaCTGCCCATTTTCCTGAGATTaagttaatgtgtgtgtattaaagagTGTACCCCTTTTGTTTGAGTCTGTGTTcgtatttgtatgtgtgaatgtgttatgtgtgtgcaCCATTTTGCACCACACACTACAAATCAAAGTTTTTGTAAgcatgtgtgtctttgtgttcattttttttttttatgtatgtttgtgCGTGGGTGTGTTCATGTCATACGTGTTTAATCAAACGAGTTATCTAATGGTGCCAGATAAGAAGTGGCAatagcagaaacacacacacacacactgctgctttaatctcCTGCCCTGTACTCTTGATAAATCATTGCTAGCCTTTAGCCTGCACCCAACTGGATTGCATTTTAGCAAAGACACCTAAGTATCAAGTTGTAGTAATTAAACACTGAAAGAGGGCAGCACGCAACTTGAGCTTcaaatattatgatattattaataCGAAGTGTGCGGTTTTATTTAGCTCTCATTTGGCAGCCAACTCTCCAAATGCATGTTAATAGGAGAAACAGACTTAAtcatgtgtttgtatatgtatgTGACGCATACATGTATGTAAGTCATCAGCCTGCATGCGCTTCATGAGCAAGAAGCTGCCTGAATGTACTGCAATTTTGGTAATTTCACACAAAGTGTTATTTGCATTATTCATGTTTATGGACCAAATAATGTCAGGCatcatgtacatttttttttcttttccagtatTTTTGCATTGGTTCatttagaatgtctttgtaacAGGAAGTATCCACATGCATAAAAAgctattcatttgtttgtgtcaATGTGTATCTAATTGTGTAAGTTACATTATGGAAATCAAGCCTCAGTTTGAATTTTGCTGCTTCAGGATTTCATGCAATATAACTATTTTTaagatttgcatttatatttttatctgtgaAAAAAGACATCATTGCGTTATGAATGTAATTGCACTTCTTTAGAGCTTTAAAgtggaaattaaaaaagagaaaggtaTCACTTTCAA
>XM_026935976.2
GAAATTTCCGGATAACACTAGAGATATGCacgtgaaaagaaaacaaaacaagacaaaacaagatCTGGTTAATTATATTAGTGAGTTGTTTTTGGCAGCTAATACATCCTGTTGCTGTTCAGCTTTTCCTGAGGATCTGTGCGCTTCATGCATCGCTGCTTTCCGCACTGAAAGCCCAGATTTCTGTCACCGCTCCAGCAAAGCAGCGTCGTGTCTTCGTGGAAGGACGGGCGGGTTCTCCTGAGCTTCACCATGTAACACGATGGTCATGAGTGCGTGGCAAacgcaagaagaagaagaagaagaagaaaatctcAGGACAGATATGAAGTGGAAAGCGATCATTGCTTTTTAAGGCGCGCGCTAGAAATTGCTTATGGACAGCAATGGATAACTAAATATGCagtagcaaaaaacaaacaaacaaaaaactccaGTGGACAGCTCGGTGACTACGCATCTGAAATATGCATGTGAGATCCCTGAGATAAATCGTCTGAAGATTATGCAGTCGCAGAGTGGCTTGTATAAGGCGGACCTGAGAAACGCAGAGGAGTAAAGCGAAGGAGGAACTGAGTGCAGTCTAACGGAGCGCCACTTCACGTCTCCCTGCTGCAGACTCGACATCCCTGACAGGCggtgtatatctatatatatctatatatgtatatgtgtgtgtgagagagagtgtgtgtgcaaccAACGCACGAGCATGTCGAACCGAAAGCACCGGGACAACCAGGAGATTTGCGCCCGCAAGGTCCGCGAGCTCGCGCAAACAGGGCCCAATAAACACTGCTTCGAGTGCGGCCAGCCTGGTGTGACTTACACCGATATCACCGTGGGCTGCTTCGTTTGCACATCATGCTCCGGAATGCTGAGAGGGCTCAACCCGCCCCACAGGGTCAAATCCATTTCCATGACAACCTTTTCCCAACAGGAAGTAGAGTTTTTGCAAAACCATGGCAACGAGGTTGGGAAAAGGATGTGGCTCTGTACGTTCGACCCAAAGACTGATGGCTCTTTTGACACATGTGACTCACAGAAGTTTAAAGAATTTCTTCAGGATAAGTATGAGAGGAAGAAATGGCATTTCTCTAAGAGTAAAGGAAGGAGGGATGTAGAGGCTCCATGGAGTACAGGAGTTCAAGCTCCTGCTCAGACTCAGCCTCCTTCTGGAAACCCAATGAACCCTGCAGCCCGGCCTTCACGTGCTCTGtCCCAGGCTCAGGTGCCGTCATGGGATAGAGTTCCAGCTGTGTCTCCAGCTGATGTTCGTACAGAGGTTTTCACAGCTCGACCCACTCGATCTCAGAGCTTCAGAGACCACACTATTAAAGaTTCCTTGTTAAGTGGGATGGAGAGGCAGAGACCAGGAACTATTTCTCCAGGAATGGGACCCCAGAGTCGCCTTCCCTCTTTCCCTGCCCTTCCACGCCCTTCAGGTCGCACGGTATCCTCAGGAGGCGGAGCACCATTTAGGACTGTCCCTAAATCTCTAAGTTTGGACTTTGGAGGTCTTGGTTCAACCCCTAGTGCACTAAGCCCTCAGGCTCCACCACTTGTCTCCCAGGACAGGTATGCTGCCGTGTCTCAACTCGACAAGGCCTTTTCTGACAACACGCCCACCACAGTTGCATCCACAACTCCCTCTAGTGGCCCTCCACAATACAGCACCCTGTTTGGCAACAGACTCTCTTCTAGTTCCACACCTGCAAGTTCTCCAGGTGTGCCAGAGGTCACTGCAGCCTCTCAGACATTTGCAAATTTCCCAAACCCCTTCTCTTCTACAGCCAGCAGTTCACAGCCTGCTTTATCCCCCAGTAACCCCTTCAACAGCACAGCCACAGGTGACAGCAATACACTTGTGTCACCCTCTCCTTCAGCTGCCTTCCCTCACTCAGCCTCCTTTCCtgctcccacctcccagaatgCTTTTCCTCATGAGCCAGCTAATAATCAGGAGACAAATGGTTTCACGTCTATCCCTGCACTGGAGTCCACATCCAAAGTCCAGCGGCCGATGTCTGTCAACCCATTTACTGGGACGGTTTACCCCACCAGAGGAACGTCACTGAACCCCTTCATCTGATTCCACCATCCCtttgaggagagagagagagagagagagagagagagagagagggttgtGGGTGtatgtgaaagagagacagagagcttgATGCCATTTCCATGACTTGAGGAAACTCCCTCCATCAGATAAGGgagataaacacacatggaCTGCCCATTTTCCTGAGATTaagttaatgtgtgtgtattaaagagTGTACCCCTTTTGTTTGAGTCTGTGTTcgtatttgtatgtgtgaatgtgttatgtgtgtgcaCCATTTTGCACCACACACTACAAATCAAAGTTTTTGTAAgcatgtgtgtctttgtgttcattttttttttttatgtatgtttgtgCGTGGGTGTGTTCATGTCATACGTGTTTAATCAAACGAGTTATCTAATGGTGCCAGATAAGAAGTGGCAatagcagaaacacacacacacacactgctgctttaatctcCTGCCCTGTACTCTTGATAAATCATTGCTAGCCTTTAGCCTGCACCCAACTGGATTGCATTTTAGCAAAGACACCTAAGTATCAAGTTGTAGTAATTAAACACTGAAAGAGGGCAGCACGCAACTTGAGCTTcaaatattatgatattattaataCGAAGTGTGCGGTTTTATTTAGCTCTCATTTGGCAGCCAACTCTCCAAATGCATGTTAATAGGAGAAACAGACTTAAtcatgtgtttgtatatgtatgTGACGCATACATGTATGTAAGTCATCAGCCTGCATGCGCTTCATGAGCAAGAAGCTGCCTGAATGTACTGCAATTTTGGTAATTTCACACAAAGTGTTATTTGCATTATTCATGTTTATGGACCAAATAATGTCAGGCatcatgtacatttttttttcttttccagtatTTTTGCATTGGTTCatttagaatgtctttgtaacAGGAAGTATCCACATGCATAAAAAgctattcatttgtttgtgtcaATGTGTATCTAATTGTGTAAGTTACATTATGGAAATCAAGCCTCAGTTTGAATTTTGCTGCTTCAGGATTTCATGCAATATAACTATTTTTaagatttgcatttatatttttatctgtgaAAAAAGACATCATTGCGTTATGAATGTAATTGCACTTCTTTAGAGCTTTAAAgtggaaattaaaaaagagaaaggtaTCACTTTCAA

Function

NR:

description
arf-GAP domain and FG repeat-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935975.2 True 3287 mRNA 0.45 14 13311880 13327219
XM_026935976.2 False 3253 mRNA 0.45 13 13311881 13327219

Neighbor

gene id symbol gene type direction distance location
mettl3 mettl3,LOC107659734,LOC107595277 coding upstream 60066 13245985 ~ 13251814 (+)
trip6 trip6,LOC103041331 coding upstream 69480 13232634 ~ 13242400 (+)
kdm6ba kdm6b,LOC106608825 coding upstream 113331 13116216 ~ 13198549 (+)
dnah2 dnah2 coding upstream 196713 12980849 ~ 13115167 (+)
serpinh2 LOC108267141,LOC108412061 coding upstream 335443 12951069 ~ 12976437 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding downstream 814 13328033 ~ 13375050 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding downstream 64590 13391809 ~ 13394172 (+)
dvl2 dvl2 coding downstream 72216 13399435 ~ 13416861 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding downstream 93314 13420533 ~ 13436596 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding downstream 116575 13443794 ~ 13450823 (+)
LOC117597082 NA non-coding upstream 44846 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 112018 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 176020 13135659 ~ 13135860 (+)
G63685 NA non-coding upstream 192203 13119468 ~ 13119677 (+)
LOC117596991 NA non-coding upstream 384893 12922870 ~ 12926987 (+)
G63889 NA non-coding downstream 60379 13387598 ~ 13387954 (+)
G63901 NA non-coding downstream 90002 13417221 ~ 13417441 (+)
G63898 NA non-coding downstream 132143 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 177241 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 242783 13570002 ~ 13572833 (+)
slc16a13 slc16a13 other upstream 26046 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 92021 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1016747 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1606544 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1706650 11590715 ~ 11605230 (+)
G63903 NA other downstream 91158 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 141333 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 231404 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 378198 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 928525 14255744 ~ 14269340 (+)

Expression


Co-expression Network