fam113 (LOC108268071,LOC108434623,LOC107741458)


Basic Information

Item Value
gene id fam113
gene name LOC108268071,LOC108434623,LOC107741458
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16655940 ~ 16661187 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935979.2
TTGTATCTGACTGACAGCACAGATTAGTCAGCTTGTTGTAACTAATAAAAACCCTCTCTGTAGGAAGACAGCAGCATTTAAACAACCTCCTTCCACTTTCCTGATGAAGCTCTTGGTTCCTGTGAACGCTGCTTACTGGCTGACTGAGTTACTTAAATCCGCCATTAATATCGTTCACTAATTCTGGGAAGTGTTTTCTCACTTTCTTCTTAAGGGCACCAGCTAAATAacgttatttgagttatttgagCTTGTTAACGTTATAACGTTATTTGAGCTTGTTAAATCTACCTGGAGCAGCTAAAGCActtgaagctgaaaaaaaaaaattatctggcATAACTCTGCAGACGACATTTTCTGCCACAGACATCTTGACGGCTTTGGTTTGGTTCCACACtaagctagttaactagctatATTACTGCTTTACAGTTAGCTAAATTAGCTGGTAAGATGCGAGAGGCCTGTATGAGAACTGTAACTCATCGTCAAGCTAGTCAACTTCTCCATAACAAATTTGTTGTTGTGCTTGGCGACTCAATTCAGCGGTCTGTGTATAAAGACTTGGTGTTGCTTTTGCAAAGAGACTCTTATCTGTCGGTATCCCAGCTCAAAAGcaagGGTGAGCTGTCCTTTGAACAAGACTGTTTAGTAGAGGGTGGAAGACTAGGTCATATGAACAATGGCACTGAGTACAGAGAGGTTCGTCAGTATCGCACAGACCATCACCTGGTCCGGTTCTACTTCATCACACGAGTCTTCTCACGCTACATGGAGAGCATCCTTgctgacttcaaacatgatctGAAGCCAGATGTGGTCATAGTCAACTCCTGTGTTTGGGATGTATCAAGGTACAACCGTAAGTGGGTCCCAGAGTACAAGGAGAacctaaataatttttttgtgcaGCTGAAGGCTGTTCTGCCAGAAGAAAGCCTTGTGGTGTGGAACATGACCATGCCTCTGGGTAAGAAGATCATAGGAGGCTTTCTGGTACCCGAGATTCAGGATATGGGCCCAACTCTTCGCTATGATGTGATTGAGGCAAACTTCTATGGTGCAATGCTGGCAGATGCATATGGGCTGGACGTTCTAGaccttcactttctctttcgGTTTAGCCTCCAGCACCGCATGAATGATGGGGTTCACTGGAATGCTTTAGCCCATCGTCAGATCACATGCTTGCTGTTGGCTCATGCTGCTCAGGCCTGGGGCGTAGAGCTGCCCAACCCTTTAGCCACAGACCAGAGTAAGAACGTGGTTGCTGGATTACAAGCAGACTCCAAATCAAAGTGACTACAGGCCAGCAGGATCCATGGCAGATTCTGGTCATTATGGAGTGCCAGTCTGGCAACAACAGCTGCAGTATGATGGCTTTGGACCCCATTTTTATGAGAATGAATTACCtacactctctcagttcagCACTGGTTACTTCAGCTTTGAGAACAAAACAACTGATAATGGTGGGAACTGCTACGTCCGCAGTGGTGGTAATGGCAGAACTGCTCCTGCTGCCCCCTCCTGGCCAGGGAACAACTTTGTGATgaagcaaaaacacacaaagcgCCAGTATAACCCATACGCTCGGTATAATCCTAATAACCGGCCTTACAGATActgaaaaaaagcaataatgtgATTTGATTATGGCTGAAATATACTGATGTTCTTCAGAACCTTCATCAGCTCGAACTAAATGTAAAACTGCTTTGGAAGAAACTTAGttcttttgtttaatgtaaGATGTAAATCTGTAAGCTATagcttttttcacttttttataatGTGCCATTGTGGATTTCCAAAACTatcattatttacttttttaacagCTTACTGTTTTTGTGCTTCATTGTTGGTGTTCTTACTCATCTCAGGCTTTTATTGGTGGTATTTTATATGGACACCATTGTATTGTCTACAGTTTccaatttttgtattttatatgcCATACAGCCCTCAACCCTGCTTTGTATGGATACAATACTGGCTGTTTTGGAGTCTGCCAAAATATTGTATGGGGTTATATTGTCTTTTTGTAAATgtcttttgttgttattttttaaagttggcACTTGTGCaagttacaaataaaatgttgcATGTACAATAA

Function

NR:

description
PC-esterase domain-containing protein 1A-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935979.2 True 2125 mRNA 0.42 8 16655940 16661187

Neighbor

gene id symbol gene type direction distance location
otub1b otub1,LOC106608596 coding downstream 2153 16649185 ~ 16653787 (-)
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding downstream 71407 16566064 ~ 16584533 (-)
LOC113539955 LOC108267556 coding downstream 91803 16552388 ~ 16564137 (-)
LOC117596996 NA coding downstream 120054 16528806 ~ 16535886 (-)
zgc:103586 cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619 coding downstream 141092 16506973 ~ 16514848 (-)
adad2 LOC108267669 coding upstream 1942 16663129 ~ 16669417 (-)
rcor2 rcor2,LOC107588183,LOC107668449,LOC107749809 coding upstream 54018 16715205 ~ 16726855 (-)
arl2 arl2,LOC107588185,LOC107668402 coding upstream 101679 16762866 ~ 16768038 (-)
gpha2 gpha2 coding upstream 144673 16805860 ~ 16808136 (-)
LOC113539980 majin coding upstream 149497 16810684 ~ 16815789 (-)
G65700 NA non-coding downstream 49348 16606007 ~ 16606592 (-)
G65508 NA non-coding downstream 204048 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 224422 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 226582 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 228533 16427201 ~ 16427407 (-)
G65715 NA non-coding upstream 14073 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 67504 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 74966 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 142008 16803195 ~ 16804254 (-)
G65809 NA non-coding upstream 276026 16937213 ~ 16937420 (-)
bmp15 LOC108267203 other downstream 50223 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 61435 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 229316 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 584248 16054528 ~ 16071692 (-)
smim20 NA other downstream 663955 15973579 ~ 15991985 (-)
G66053 NA other upstream 739407 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 778290 17439477 ~ 17444188 (-)
G66281 NA other upstream 932561 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 1131039 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 2388963 19050150 ~ 19155221 (-)

Expression


Co-expression Network