LOC113539887 (dbt,LOC108267843,LOC108411488)


Basic Information

Item Value
gene id LOC113539887
gene name dbt,LOC108267843,LOC108411488
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29752071 ~ 29760972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935987.2
CCACAGAACTTTTATTATTCCAAGATGGTTCACTTACATATAGTTTCCGGGTTTCACCATCTTAGTGGAACTCTAAGATGGCGGCGGTGACGACAATGCGGCGCTGCTTCAGGACCCTGAGACATCTGCCCCAGTTGTCGTCCCGCCGCTGCAGACCGTGTCCCAGGCTCTGGACATCTGGACCTGATCATGTCCTCCATCACCCTTCAGCTTTCAGCTCACAGCAATGGAGAGGATTCAGACAAAGCAGTGTGGCTTCTGGACAAGTTCTTCAGTTCAAGTTGTCGGACATCGGCGAGGGTATCATGGAGGTGACGGTCAAAGAGTGGTATGTGAAGGAGGGTGATAAGGTTTCCCAGTTTGACAGCATCTGTGAGGTGCAAAGCGACAAAGCCTCCGTCACTATTACTAGCCGATATGATGGAATCATAAGGAAGCTTCACTACGACGTGGACGCAGTCGCCTTTGTCGGATCGCCTCTCGTAGACATTGAGACAGACGGGCCACAAGATGGCGGTCATGAGGAGGACGTTGTTGAGACACCTGCAGTGtctcatgaacacacacaccaagagaTTAAAGGACATAAAACTCTGGCTACACCTGCAGTGCGACGTCTTGCCATGGAGAACAATGTTAAGCTGAGTGAGGTGGTGGGGACAGGGAGGGACAGTCGTATCCTAAAGGAGGACATCCTCAACTTCTTGGCCAAGCAGACGGGTGCTATCCTTCCTTACGATGACGTGAAGGTGCCGTCGGCGCCAGCTGCTCCTGCCAAGGCCGAGAAACCAGCCCCGAGTCCTACACCCACCGTCCCCCGACCAGTCTTTACTGGGAAGGACAGGACAGAGCCACTCAATGGTTTTCAGAAGGCCATGGTGAAGACAATGACGGCTGCCTTGAAGATCCCTCACTTCGGTTACTGTGATGAGGTGGACCTCACTGAGCTGGTGCGATTACGCTCAGAACTGAAAGGTCTGGCTGAATCTCAGGGAGTCAAACTTAGCTACATGCCATTCTTCATTAAGGCTGCGTCTCTCAGCCTGCTGCAGTTCCCCATCCTCAACGCCTCAGTCGATGAAGACTGTCAGAACATCACGTACAAGGCATCCCATAACATCGGTCTTGCCATGGACACTGTGCAGGGTCTGCTGGTGCCCAAGGTGAAAGACGTGCAAGCTCTGAGTGTGTTTGAAATCGCAGCTGAGCTGAACCGACTGCAGGCGCTGGGCTCGGGTGGGCAGCTGGGCACGGCCGACCTGACGGGGGGCACGTTCACCCTCTCCAACATCGGCACGATCGGAGGGACCTACACCAAGCCGGTGATCGTGCCTCCGGAGGTGGCCATCGGAGCGTTGGGAAAGATCCAGATCCTGCCGAGGTTTGACGCCGGTGGCGAGCTGGTCAAAGCCCATGTGATGAGCGTGAGCTGGTCGGCTGATCATCGCATCATCGATGGTGCCACCATGTCCCGCTTCTCCAACCTGTGGCGCTCGTACCTGGAACGACCCGCCTCCATGCTGCTAGACCTCAAATGAGACACGTTCACTCTGTGGGGTCCTTAAAAAACTGGCGTTTCATCACTACACTGTGCCTTCTAACAGTTACTCACAAAAAAAGTGACAATCTTGATCTTTAACCTTTGATTGAACTTGGAAGTATGTgtgcatattttaataaaattacagtTGTTGTGTCTCATGTA

Function

symbol description
dbt Predicted to enable acetyltransferase activity and lipoic acid binding activity. Acts upstream of or within branched-chain amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in brain; gut; intestine; liver; and muscle. Used to study maple syrup urine disease. Human ortholog(s) of this gene implicated in maple syrup urine disease. Orthologous to human DBT (dihydrolipoamide branched chain transacylase E2).

NR:

description
PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial-like

GO: NA

KEGG:

id description
K09699 DBT, bkdB; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935987.2 True 1705 mRNA 0.53 12 29752071 29760972

Neighbor

gene id symbol gene type direction distance location
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding upstream 31303 29704488 ~ 29720768 (+)
LOC113540482 LOC108267690 coding upstream 149241 29596466 ~ 29602830 (+)
LOC113540073 NA coding upstream 192946 29554015 ~ 29559125 (+)
ccdc39 ccdc39 coding upstream 198524 29541983 ~ 29553547 (+)
dcun1d1 dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878 coding upstream 212056 29534634 ~ 29540015 (+)
rgs18 LOC108268317,LOC108428888 coding downstream 206699 29967671 ~ 29976291 (+)
rgs1 LOC108267137 coding downstream 225213 29986185 ~ 29989435 (+)
rgs13 LOC108268340 coding downstream 237532 29998504 ~ 30001345 (+)
blvra blvra coding downstream 253683 30014655 ~ 30022571 (+)
ebi3 LOC108267125 coding downstream 284923 30045895 ~ 30050490 (+)
G73155 NA non-coding upstream 18708 29732651 ~ 29733363 (+)
G73123 NA non-coding upstream 28321 29722066 ~ 29723750 (+)
G73154 NA non-coding upstream 32754 29718462 ~ 29719317 (+)
G73151 NA non-coding upstream 39389 29712470 ~ 29712682 (+)
G73118 NA non-coding upstream 122248 29629593 ~ 29629823 (+)
G73169 NA non-coding downstream 4148 29765120 ~ 29766106 (+)
G73185 NA non-coding downstream 31544 29792516 ~ 29794205 (+)
G73512 NA non-coding downstream 168966 29929938 ~ 29930168 (+)
G73533 NA non-coding downstream 271338 30032310 ~ 30032788 (+)
G73564 NA non-coding downstream 323466 30084438 ~ 30084819 (+)
zgc:153115 LOC108268059 other upstream 70896 29673514 ~ 29681175 (+)
asip2b NA other upstream 128274 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 555922 29181767 ~ 29196149 (+)
G72873 NA other upstream 839967 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 954912 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 693785 30454757 ~ 30478293 (+)
G73944 NA other downstream 985159 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1300758 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1590229 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 1998917 31759889 ~ 31776798 (+)

Expression


Co-expression Network