arl2 (arl2,LOC107588185,LOC107668402)


Basic Information

Item Value
gene id arl2
gene name arl2,LOC107588185,LOC107668402
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16762866 ~ 16768038 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935997.2
TGGTTGTTGTGACCAATAATGTTTGAGGATGTTGGAGTCAACAGCAGCAACACTTCCTGGTTTGATGAAAGCGGTGAAGTCGTGAAGGAGTGATGCTTCTCTTAAAACAGAAAAGATAGCTGTGTTGTTTTTAGAGCTGTAAAGTGTTtcattgtattattttgttttgtgagAGTTTCGCAATGGGTTTACTGACGATATTAAAGAAGCTGAAACATAAGGAGCGAGAGATGCGCCTGCTGATGCTTGGGCTGGACAATGCTGGAAAAACCACCATACTGAAGAAGTTTAATGGCGAGGATGTCAGCACCATTTCTCCCACATTAGGATTCAACATAAAGACACTAGAACACAGAGGGTTCAAGTTGAACATCTGGGATGTGgggggtcagaggtcactgCGGTCGTACTGGAGGAATTATTTTGAGAGCACAGATGGACTGGTGTGGGTGGTGGACAGTGCAGACAGACTGAGACTGGAGGACTGCAGGAAGGAACTCGGTGCACTTTTACTGGAGGAGAGACTAGCAGGAGCCACCCTCCTAGTGTTCGCCAACAAACAGGATTTGCCTGGTGCATTGTCTAAGGATGCCATCAGAGAGGCGCTAGCTCTGGATGAGATTAAGACACATCACTGGTGTATAGTGGGCTGCAGTGCAGTGACTGGAGAGAACCTCCTGACAGGCGTAGACTGGCTCCTGGATGACATCGGTGCTCGCATTTTTACAGCAGACTGAGAAAAGAGCcttgtattttaatgttgtgataTAACTGTAGAAACAGCATCTTATCTATGGTTATAACCCTGAGGAGGCATCATAACTAATGCACCAGTCTGCATGgttatagttgtttttttttcctttcagatcagtaacattaacagtGCAACACTCTTGGTGCCTTTATTAAGGACCTATTTTAGCCTCATGTTGCCACATAACCCACATAAGGCTAAATGTTTGTGTTAAGGAGAAAACTGTAGTGTTCAAATTGTACCATTCTGGGATTAAGTTGAGAAATGCATTCAGTGTTTAAGCTGTTAATGCCTGAACCTCAGCCAATGGCCACTGTTTGCTGTTCATATGGTTTCAGAGGTTTATGCATTTATCAAATTATTTCTGCACTGCTTGTAAAGtgatcatttcaaaataaaattttgaaagACTTGA

Function

symbol description
arl2 Predicted to enable GTP binding activity. Predicted to be involved in protein folding. Predicted to be active in cytoplasm and microtubule cytoskeleton. Orthologous to human ARL2 (ADP ribosylation factor like GTPase 2).

NR:

description
ADP-ribosylation factor-like protein 2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07943 ARL2; ADP-ribosylation factor-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935997.2 True 1172 mRNA 0.43 5 16762866 16768038

Neighbor

gene id symbol gene type direction distance location
rcor2 rcor2,LOC107588183,LOC107668449,LOC107749809 coding downstream 36011 16715205 ~ 16726855 (-)
adad2 LOC108267669 coding downstream 93449 16663129 ~ 16669417 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding downstream 101679 16655940 ~ 16661187 (-)
otub1b otub1,LOC106608596 coding downstream 109079 16649185 ~ 16653787 (-)
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding downstream 178333 16566064 ~ 16584533 (-)
gpha2 gpha2 coding upstream 37822 16805860 ~ 16808136 (-)
LOC113539980 majin coding upstream 42646 16810684 ~ 16815789 (-)
badb NA coding upstream 51366 16819404 ~ 16823151 (-)
dysf dysf coding upstream 334491 17102529 ~ 17179641 (-)
cd99l2 cd99l2 coding upstream 561509 17329547 ~ 17343282 (-)
G65718 NA non-coding downstream 24953 16736153 ~ 16737913 (-)
LOC117597072 NA non-coding downstream 26969 16728691 ~ 16735897 (-)
G65715 NA non-coding downstream 78275 16675260 ~ 16684591 (-)
G65700 NA non-coding downstream 156274 16606007 ~ 16606592 (-)
G65508 NA non-coding downstream 310974 16451677 ~ 16451892 (-)
G65722 NA non-coding upstream 35157 16803195 ~ 16804254 (-)
G65809 NA non-coding upstream 169175 16937213 ~ 16937420 (-)
LOC117597208 NA non-coding upstream 312126 17080164 ~ 17095201 (-)
G65984 NA non-coding upstream 486792 17254830 ~ 17309084 (-)
G66028 NA non-coding upstream 542349 17310387 ~ 17311060 (-)
bmp15 LOC108267203 other downstream 157149 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 168361 16592562 ~ 16594505 (-)
tnfsf12 tnfsf12 other downstream 336242 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 691174 16054528 ~ 16071692 (-)
smim20 NA other downstream 770881 15973579 ~ 15991985 (-)
G66053 NA other upstream 632556 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 671439 17439477 ~ 17444188 (-)
G66281 NA other upstream 825710 17593748 ~ 17634868 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 1024188 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 2282112 19050150 ~ 19155221 (-)

Expression


Co-expression Network