sdcbp (sdcbp,LOC107660837,LOC107730132)


Basic Information

Item Value
gene id sdcbp
gene name sdcbp,LOC107660837,LOC107730132
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21227985 ~ 21233685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936000.2
GCACATCACCAGCATGACCTCTTTTCTGACAGAGCTCTTAGCTAAAACAGTGATGAAGCTCGCGCGCGACCTGAGAACCCACGGTGCACGCGCTCTACCGAACTGACGGAGTGTGCACTTGATACCACGTGGTCAGCTCATCATCTGAGACACAGAAGGTCAAGACTAGTCAAGGATCACGATCAGTATTGGCTTTCTGAACCGCAGAGGAGGACAGCGACTGACTAGTAGCCTGCGGACGCATTCTGGGTGGATATACCTACACTCTGAAGCCATCACAGCTGCACACACTTCTTCATCTTCAAGGTAACTGATACAGTGCAAAAGAAACAGGAGAGCAACCATGTCACTGTATCCGTCTTTAGAAGACCTGAAGGTGGATAAATTTATTCAGGCGCAGAACACTCCTACTGCCAGTCCATCCAAAGCCACACCCCTGGCTCTTCCTGACCCCGCCCACTACCAATCTAGCCCCGCCCACACTGGGTCAAACGTGGAGGAAGTTGGAACAGatgCCTCTGGAAGTTTGTATCCTCAGCTGAGTGAGTTTATGGGCCTGAATCTTAGTATTGAGGCAATAAAAGCCTTTTCTATTACAGTCCCTGAGCAAAGCAGTGGAGCTCTCAGTGTTCATTCGTCCGgcacaaactggacagttgcTCCCATAACTGGCAATGACATGGGAGTGAAGAGGGCTGAGATTCGGCAGGGTGTTAGAGAGGTGGTGCTCTGTAAAGACATGGATGGCAAGATCGGCCTCCGCCTCAAAGCCATAGACAATGGGGTGTTTGTACAGCTAGTACAAGTGAACACTGCGGCAGCATTAGCAGGGCTTCGCTTTGGCGATCAGATTCTGCAGATCAACGGAGAGTCCTGCGCTGGCTGGAGCAGTGACCGTGCACACAAGGTTCTGAAGAATGCCAGCCCTGAGAGAATAACACTAGCTGTACGAGACAGGCCAATGGAGCGTGCTGTCACTCTGCATAAGGACATGAGCGGACAGCTTGGTTTCATCTTTAAGAAAGGCAAAATCACTTCCATAGTGAAGGACAGCTCTGCAGCTCGTAATGGACTGCTCACTGACCACCAGATCTGTGAAATCAATGGACAGAATGTGATTGGACTGAAGGACTCTCAGGTGTCAGACATCCTCAACACTAGTGGGAATGTTGTGACTGTAACTGTGATGCCAGCGGTCATCTTTGAACACATGATGAAAAGGATGTGCAACAGCATTGTGAAATCTCTAATGGACCACTCCATTCCTGAGGTGTGATACGGACTGACCCACACCTGGCTCAGAATGGGCTTGCACTACAGCTTAGATGAAGTGGCGTACTGTACACATGGACAGTGTTTGTGCTTTTGAGCCATTTAATACAAGAAGTGAAAAGTGAGagacatttctcttttttttgcagtatttctCTCTTCCATCAGTAACTAACTCCTTTATGTTAAATGTGCAGTGTTTTTCAATGCTGAATtattctcaaaactcaaatgaCAGCTTCActtatataaagtaaataaaagatcTTTATCTGCTATGCTATATGCAAA

Function

symbol description
sdcbp Enables syndecan binding activity. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SDCBP (syndecan binding protein).

NR:

description
PREDICTED: syntenin-1

GO: NA

KEGG:

id description
K17254 SDCBP; syntenin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936000.2 True 1563 mRNA 0.47 9 21227985 21233685

Neighbor

gene id symbol gene type direction distance location
unm_hu7910 asph,unm_hu7910,LOC107730121,LOC107698672,LOC108436147 coding downstream 2001 21195948 ~ 21225984 (-)
nsmaf nsmaf coding downstream 39207 21168890 ~ 21188778 (-)
ank2b ank2,LOC103361685,LOC108436150,LOC108267515 coding downstream 67211 21012252 ~ 21160774 (-)
mad2l1 mad2l1,LOC107730133,LOC107698665,LOC107680902,LOC107732594 coding downstream 328893 20895441 ~ 20899092 (-)
LOC113539812 NA coding downstream 389887 20835761 ~ 20838098 (-)
LOC113540421 LOC108267573 coding upstream 1568 21235253 ~ 21248637 (-)
LOC113540120 LOC108267808 coding upstream 103423 21337108 ~ 21350811 (-)
sox17 LOC108267806 coding upstream 142710 21376395 ~ 21379959 (-)
sox32 LOC108267240,LOC100698545 coding upstream 165870 21399555 ~ 21401268 (-)
mrpl15 mrpl15 coding upstream 180176 21413861 ~ 21417828 (-)
G68186 NA non-coding downstream 423881 20803417 ~ 20804104 (-)
G68108 NA non-coding downstream 591786 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 592192 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 596275 20630166 ~ 20631710 (-)
G68080 NA non-coding downstream 657055 20570399 ~ 20570930 (-)
G68466 plag1 non-coding upstream 87133 21320818 ~ 21321146 (-)
G68495 NA non-coding upstream 173426 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 237947 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 239134 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 240902 21474587 ~ 21475776 (-)
znf16l LOC108268318 other downstream 402465 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1262134 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 1284151 19919480 ~ 19943834 (-)
G67587 NA other downstream 1339259 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 1346345 19879968 ~ 19881640 (-)
chchd7 chchd7 other upstream 71007 21304692 ~ 21313897 (-)
G68462 NA other upstream 92361 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 120934 21354619 ~ 21371010 (-)
G68760 NA other upstream 700841 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1395930 22629615 ~ 22636088 (-)

Expression


Co-expression Network