ccdc39 (ccdc39)


Basic Information

Item Value
gene id ccdc39
gene name ccdc39
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29541983 ~ 29553547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936004.2
TTCCGCCTTCCGTGGCTTCAGGACCGTGAGCAGCCTTTTGGCGCTCTCTATTGGCTGAAGACGGCGCGCGCCTGAAAGCAACCCCGTTGCTAAGCAACCCACAGCACAACGCTGGGAATACTAGCCGCTAGCGTTTAAGGCTTGTGTTAAATAAACTAAGCTGCTTGATATTTCCAGAAGTTTctgctaaataataaaaaaatggctAACATGGTTTTGTCGGAGGTTTTGTCTGAAATTGGCTGGGACCGAAAATTCGCCATTCCAGTGTCAAACACCGAGAATAAAGCTTTGGAGGATGAGAtccagagaaaacagaaagagctAGCACATGTGGAAAACCAAGCGAGTCAGCACAAGGAGAGGATCAACGCCATGACCGAACATCTGAAAAACGTCCAGCAAGAGCTCACTCACACTCAGGCTCTGTGCAGGGCTGTAGAGAAGCAGACCGATTCAGAGCAGCACTTCAAGGCCTTGGATGAGCGAGAGACCGGACGGCTGCGTCAGGAGATTTCCCAGCTGCAGAACGAGCTGATATCACTGCGAGAGAAGAAGAACTCGCAGGAGAACTACATCTTTAAAGCGACACAGAAGATGGAGGAGCTCAAGGATCAGCTGAACTGGGACCAGCAGACTCTGGACGCCTGGCTGGAGGAATCGTCCCGCAAAGACGAGGACACCATGGCCATCGTCAAGTACGCGCAGCAAGACGAGAGCAGGATTCGAGAGCTGACTCTGAGCATGGAGAAGCTGACTCTGGAGGCGAACCGGAAGAGAAAAGCTTTGGACAACGAGGTTACCGAGACCATCATGGCGCAGGTGGCTCTGGAGAAGACGGTTGAGATGGTGCAGCAGGCCCACGCGGAGAGACAGGAGCTGATCAGCCAGTGGGAGAACTCCATCGAGCAGATGAGGAAGAAAGACCAGGATCTGCAGCAGTGCGCTCTGctgctGGCAGAGACGAACCAGGTGGTCCGCGAACGCAAAGCACTCATAAAAGAGAAGCAGAACTTCCTGGCTAACGAGGTGGAGAACAACAAGGAGTGCGAGAAGAAGATTGCTGCGGTCGAACGCCAGGCCAACAGGCTACGGCAACAGTTTCAGGAAGAGGAGAGCAACCGCACACGACTGCAAGATGAGCTGGTGAGCCTAAAGGGCAGGTTGGATCGCACCGCTACAGACCTGGAGGCTAAGAGATCCCACTTAGCGAGCATCAAGAAGGACATCAACGATAAAACGGCAAAATTAGAGGATATTCAGCACTATAACGTCGCTCTAGAAGAGAAGTTGCAGGCCGTGACTGAGGAGGCGCTTAGCGTGGAGGAGAGAGCCGCTCAGATGGAGCAGCTCCACCGTGATCAGGAGAAACATCTCAAAGAAATTGACACCCAACTCCAGCGGGAACAAAAGCTCCTCTTCCAGAAAAAGCAGGAGCTGCAGACACTGCGAGCCAAGGAGAAGAATGTCGTAGCAGATATCTCAGGAAGTCGTGTAGCTCTGTCCAGCCTGGACATCCGCCTCAGTAAACTGGACCAAAACGCTCTCAAGCAGCAGGAGTACATCAATAGCCAGGATTTCCAGATCCAGCTTCTGGAGGGGAAGATGGCGCGTCTGAGCGGTAACGTGAACAAGGAGGAGAAACAGGCGCTGGAGAAGCAGGTCTCCGAGCTGAGCGAGGTGctggaggaaaagaagaaggcaGCTGCTATGCTTGCAGCACAGCTCAAGAAGCTTCAGAATGACATCCGCTGTGTGAggaaagagaatgagaagaCGGGAGCAGAAGAGAGAAACCTGACCACAAAGATTGAAGAATTGAACCTCGTTGATGACACCTTGGACAAAGACCTGAAGAAACTTCGTCTCAAGAAACAGGACAGCATAGTGGAGAACAATATCCTGCAGCTGGAGGTGAAGCGCCTCAGGACCATGCTGTATGACAAGGCGGATGGAGTTCTTTCTCTGGAGAAGAGGAAGCTACAGCTGCAGACGGCCATGAAGGAGCGGCAGGAGGAGATCCGCGTGCATCGGGAAATGCACAGCAAGCAGCTCAAGATCACTGAGCAGGAGATGCAAGGGCTCAGGGCCCAGTTGCATGAACGACTGTCCAGAGTTgacaagatgaagaaaaaatacGAGATCATCACCATTTCCATGGCTGCCCCAGAGGGCGAGGAAGACAAATCGCAGGCCTATTACATTATCAAgGCAGCTCAAGAGAAGGAGGAGCTTCAGCGCAAGGGTGACGATTTGGACTCCAAGATCCGcaaggcagagaaagagaacaaggCATTGGAAAACACCATGCACCTGCTCAATAATCATAACAGCACCTATCGCAAATCCTTCAACAAGGTCACAGAGTCCAGTCCTGAGTATCAAGAGAAATTGAAGTTAGAGGAACAGAAAAGAGCTGCAGATGAAAAGGTCAAGTTCAAGAGACGCCAAATCAGAGAGCTGCAGGAAAACATTGAGGCCATGAGCAGCTCATTGAACAGCCTGCAGCAGGAGGAAGTTGctcaaacaaaaagaaatgttgaTCTCCATGCCCGTATTGTCTCTCTGAATAAAGAGCTTGTTTCTCAGCAGGAGAAACTGGACAGGGCCACTAAACAGTCCTCCAAGCTGAAAAAGGAGATCCGCTCTACTAAAAACACCACAGAGGAGACCTTTGAGGAACGTGACATCAAGCTGAAAGAACTGAAAGACTGCAAGAAGGCCATCAATAAGATGCTCCTGGATGTCATGGAGCAGTATCCTGACCTCCAGGCGATTTTACAGACGTACTACATGCAGGCCAatcttcctcttccttctccCGCATCTACCCCTTCGAGCAGGAGTTCAAAGTTGAGCTCAGCATGtagctctttttctctcagATCTTCCAGATCCTCAGGACCATCAGCCGACAGCAGCGCCAGAGGCTCGGCAGTTCACTCGCCCTCCGTAAAGATGGTTGAGTTAGGCCTTGGACTTCGGACTCAGTCTCCTGGCAGtgacagcagcaggagcagcaggagcagtCATCTCAAGACTCCTTAATCAGCAAATCCTCCAAgttgcaaataaaatatatactaaatGTCTTAAAAATTTGAATGTTCCACTTAAATGAGGTTCGAACTCAATCCTGGGTGTCTGCAAACTCATGTATAAGGAAGTATACTCTTGCAACTGTATTAGGCTTATGGGACATGCTGAATTTGATTATTAATCAATGttctgtcattttaaaaaatccttgaGATGCTGATAAATTGCATATAATTATATCACTCATTTCTATATCTCATGCCACATGTCTTTCTGCAATGCTGAGAATGTAGGTTTGATTTGATCTACAATTGAGTGTTTGCTGCTCGCCATGACAACTGTTTTTGTTTCCGCATGAACTGTTGACATTTCACTACGTCAAAGCtgaataatttcatataaaagcaCCTCCTGAAGTATTCTAtccctcttatagcacagcagtttgccacaattacaatttttacaatttattaaagaatgacacgtcatccttt

Function

symbol description
ccdc39 Involved in cilium-dependent cell motility and epithelial cilium movement involved in determination of left/right asymmetry. Acts upstream of or within determination of left/right symmetry. Located in extracellular region. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 14. Orthologous to human CCDC39 (coiled-coil domain containing 39).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K23729 CCDC39; coiled-coil domain-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936004.2 True 3536 mRNA 0.49 20 29541983 29553547

Neighbor

gene id symbol gene type direction distance location
dcun1d1 dcun1d1,LOC107568628,LOC107722250,LOC107681826,LOC105889496,LOC107708830,LOC103032878 coding upstream 1968 29534634 ~ 29540015 (+)
b3gnt5b b3gnt5 coding upstream 28204 29500475 ~ 29513779 (+)
tbl1xr1b tbl1xr1b,LOC108267995,LOC108437519,LOC103032574,LOC107656866,LOC103359463,LOC107568629 coding upstream 45398 29481242 ~ 29496585 (+)
LOC113540045 LOC108267996 coding upstream 82688 29455551 ~ 29459295 (+)
ephb3a ephb3a,LOC108267069,LOC108437521,LOC107681809,LOC107599837,LOC107708817,LOC107656865,LOC105889460,LOC107722542 coding upstream 118215 29390033 ~ 29423768 (+)
LOC113540073 NA coding downstream 468 29554015 ~ 29559125 (+)
LOC113540482 LOC108267690 coding downstream 42919 29596466 ~ 29602830 (+)
rc3h1b LOC108267889,LOC108437509,LOC107681708 coding downstream 150941 29704488 ~ 29720768 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding downstream 198524 29752071 ~ 29760972 (+)
rgs18 LOC108268317,LOC108428888 coding downstream 414124 29967671 ~ 29976291 (+)
G73092 NA non-coding upstream 548 29541095 ~ 29541435 (+)
G73089 NA non-coding upstream 15065 29526202 ~ 29526918 (+)
G73088 NA non-coding upstream 17147 29524298 ~ 29524836 (+)
G73072 NA non-coding upstream 17741 29483262 ~ 29524242 (+)
G73069 eif4a2,LOC107708841,LOC107103884 non-coding upstream 20961 29519108 ~ 29521022 (+)
G73118 NA non-coding downstream 76046 29629593 ~ 29629823 (+)
G73151 NA non-coding downstream 158923 29712470 ~ 29712682 (+)
G73154 NA non-coding downstream 164915 29718462 ~ 29719317 (+)
G73123 NA non-coding downstream 168519 29722066 ~ 29723750 (+)
G73155 NA non-coding downstream 179104 29732651 ~ 29733363 (+)
fubp1 fubp1 other upstream 345834 29181767 ~ 29196149 (+)
G72873 NA other upstream 629879 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 744824 28792847 ~ 28797159 (+)
gng5 NA other upstream 780532 28758545 ~ 28761451 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other upstream 1203810 28316404 ~ 28338173 (+)
asip2b NA other downstream 66446 29619993 ~ 29623797 (+)
zgc:153115 LOC108268059 other downstream 119967 29673514 ~ 29681175 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 901210 30454757 ~ 30478293 (+)
G73944 NA other downstream 1192584 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1508183 31061730 ~ 31097929 (+)

Expression


Co-expression Network