Gene
RNA
| Item | Value |
|---|---|
| gene id | mrpl15 |
| gene name | mrpl15 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 21413861 ~ 21417828 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| mrpl15 | Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in visceral fat. Orthologous to human MRPL15 (mitochondrial ribosomal protein L15). |
| description |
|---|
| PREDICTED: 39S ribosomal protein L15, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0015934 | large ribosomal subunit | cellular_component |
| GO:0005739 | mitochondrion | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02876 | RP-L15, MRPL15, rplO; large subunit ribosomal protein L15 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026936006.2 | True | 1081 | mRNA | 0.49 | 5 | 21413861 | 21417828 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| sox32 | LOC108267240,LOC100698545 | coding | downstream | 12593 | 21399555 ~ 21401268 (-) |
| sox17 | LOC108267806 | coding | downstream | 33902 | 21376395 ~ 21379959 (-) |
| LOC113540120 | LOC108267808 | coding | downstream | 63050 | 21337108 ~ 21350811 (-) |
| LOC113540421 | LOC108267573 | coding | downstream | 165224 | 21235253 ~ 21248637 (-) |
| sdcbp | sdcbp,LOC107660837,LOC107730132 | coding | downstream | 180176 | 21227985 ~ 21233685 (-) |
| trnaa-ugc | NA | coding | upstream | 340 | 21418168 ~ 21418239 (-) |
| LOC113540027 | rgs20 | coding | upstream | 9357 | 21427185 ~ 21430580 (-) |
| fastkd3 | fastkd3 | coding | upstream | 62787 | 21480615 ~ 21485813 (-) |
| myl12.1 | LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951 | coding | upstream | 70359 | 21488187 ~ 21492336 (-) |
| emilin2b | LOC108267875 | coding | upstream | 136698 | 21554526 ~ 21580543 (-) |
| G68495 | NA | non-coding | downstream | 5654 | 21407111 ~ 21408207 (-) |
| G68466 | plag1 | non-coding | downstream | 92715 | 21320818 ~ 21321146 (-) |
| G68186 | NA | non-coding | downstream | 609757 | 20803417 ~ 20804104 (-) |
| G68108 | NA | non-coding | downstream | 777662 | 20635904 ~ 20636199 (-) |
| G68107 | NA | non-coding | downstream | 778068 | 20635532 ~ 20635793 (-) |
| G68519 | NA | non-coding | upstream | 53804 | 21471632 ~ 21471839 (-) |
| G68520 | NA | non-coding | upstream | 54991 | 21472819 ~ 21473032 (-) |
| G68577 | NA | non-coding | upstream | 56759 | 21474587 ~ 21475776 (-) |
| G68585 | NA | non-coding | upstream | 79104 | 21496932 ~ 21501433 (-) |
| G68740 | mrc1 | non-coding | upstream | 410445 | 21828273 ~ 21828833 (-) |
| LOC113539989 | LOC108436138 | other | downstream | 42851 | 21354619 ~ 21371010 (-) |
| G68462 | NA | other | downstream | 84611 | 21326046 ~ 21329250 (-) |
| chchd7 | chchd7 | other | downstream | 99964 | 21304692 ~ 21313897 (-) |
| znf16l | LOC108268318 | other | downstream | 588341 | 20778538 ~ 20825520 (-) |
| snrpf | snrpf,LOC106609479,LOC107738052 | other | downstream | 1448010 | 19962582 ~ 19965851 (-) |
| G68760 | NA | other | upstream | 516698 | 21934526 ~ 21935169 (-) |
| LOC113540019 | LOC108268143 | other | upstream | 1211787 | 22629615 ~ 22636088 (-) |
| lrrcc1 | lrrcc1 | other | upstream | 1874220 | 23292048 ~ 23306934 (-) |
| retreg1 | fam134b | other | upstream | 1913188 | 23331016 ~ 23346573 (-) |
| LOC117597073 | LOC108267227,LOC108267226 | other | upstream | 2062137 | 23479965 ~ 23483850 (-) |
