si:ch73-211e3.1 (mamld1)


Basic Information

Item Value
gene id si:ch73-211e3.1
gene name mamld1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17208503 ~ 17275182 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936021.2
TGAGAGGGAGACAGACTACACACACGCTCGAGCTGTTCCCGTCTGCCGCTGCCGTTCAGTCTCATCAACTTGCCTGATACCTGGACGGAATGTCAAATTAGCTTGTCTTTTTGGACTAAATGTCGTTCCGTTTTCACGCAGCCAGCAAGGAAGCGATTTTAGTCTCAATTCCCGACCTTTAagtgtttccttttcttttagcTTGATcttgaatatgttttttttctattgtgaCGCTTGACACATTGAAACAAAAGTGGATTTAATCGTGGCTGAGTATCCCATCCCTCCAAGATGCTCCTGGTCTCCCAGCGGCTAGATTCACCTCGCATGGACCCATTACTGCCAGGAGTGAAGAGGAAGCTGACTGGGGCTGTGGATGGTGCTGCTTCAGTAAACGGGATCTCTGAAACCTCAATGACCCAGGGCAGTGCCAAGCGACTATGCCTTGAGGATGTTACCCTGGCCATGGGTCCAAGCTATCCCCAACACCCCTTCCCCACTGGAACTGGGATGGGTAACCAAGGAAGTGGGCTAGAAGGAAACAGACtgaacagtaataataatggttTGGGTTCTCCTTACACTATGCCTCCTAAGCCTAACCCTGGAGCAACTGCTGTAGGCTCAGGAAGTCTGGCACCTACCTATAATCCAAATGGGAACTCAGTAGCTCCTTCTGTAGAACAGGAGCTTCAAGAGATTCTGGATGAGCTTACAAAGAACCCAGACCCTTCTTTACCTGAGCTGGACATTGATAAGATCTTAGGAAACAAGGTAGATGAGCAAACAGGTAGTGCTGGAAGCTTTGCCCATCCAGAGGGGAGTGGAACTCCAAAACGTTCCCCACAAAGAGCTTCTCACCTGGAAGCCCACCTCACCCAATCCCCTGGTTTTCCCCAGGCAGGGTCTCCCCAGATGGGCCCTAGTCCAACTGGTGCTCCTTATACCCTACCCCATCCATCCAAACCAGTCCCTTCCCCACTTTCAGCATCacccctttcttcttcttcctcccaGGGCCAGAATCAAGCTCGATCACCAATGCTTTCAGCTCCACTTTCCAACCGGTCCACTTCCGGTTGGCGTGAAGTATCACGTGCCCAGCAGCTTCAGCAGTTGGCATCCAACAGTAAGCACCACTCCACCAGCAGTGGAGGGCCACCACCAGCTCAGTCAGGTTTGCCCTCACTGGGCCAGCAGGGATCCTCCTGGGCTGGTCCATCTCCCCCTTATCGGCCAGGGGACAAGCTTCCCAATTCATCCCCGCACCAGCAGCCCTTCAGCCCAGCCAGCAGCATCCAGAGTCCTCAAAGCTCTCTCATCTCCAGCATAACTCCAGCCCCATCTGCTGGACCTTCTCCCCCATATAGACCAGAAAAGCTTGCCAGTCCAGCTCTTGCTCAGCCACCCTTTAGCCCACAAAACTCACTTCTTCCAGGAAGTACTCCATCTGGAGGCTCAAATTCTGCTGTCCAGGGGTCCCAAGCAAATTATCTGAGTGGTATACCCCCAACATCAGGTTCCACAAGACCATCGCCCCCTTACCGAACAGAAAAACAACACCCTAGCCCAGCTGGTCCAACTCAGCCTGGAACCCAGCCTTCCACCCAGGGATGTCCCTTCAACTCGCAAAATAGTCAAGCACCCAACATGTCCAGTCAGCTCTACAAAGCCATCACAGCCAGCCAGCCTACCAGCAACAGTCTCAAAATACTCATGCAACAATCACAGACAAAATCTGCCCAGATGCAGCTCAGCAAAGGCACCCCCTGCAACATGGGTCCAGAAACTTTCTCTCTGAACAACACCAAGCCTTTACGGCATTTTGATCCTGAGCCTCATGCTTCCAAAATGGGGACCATTCCCTTGGGTGGATTCCACAATGGCAGCATGCAGTCCATACCACCTACATCGGCCACAGGGCATGTACATCTGCTTCAACAACGCACAATGCAGAGAGGGATGCAGGCAGATAGCATGTTACCCCATTGTGGAGAGgAACAGAATGTAGGGATGGTGCCGCATCTTCAAGACCCCTCTGCAGGGCCTCGTCCAGGGCAGGCCAGTAACTACAACATGCTGCTGAGGACTCAACTAATGAGGAAGCAGGAAAAGCAAAGGCAGATAGAGCAAATGAATGGGGGACAGATGCCAGATTGCCAGCAGGTGGCACCATTTCAAGGTCCAGGTAGAACTATACCCCCTGAATGTGGTGGTTACCCTATGGGTGTACCCCAGCATCCCAACCCCGTCATGATATCCCAGAGTGGCTCCATACTACCCAATCGCATGAATCTTCCCCCTGGATCCTTATCCCAGGTGGGCCACTCTGGTCCCTACATGGGTGCAGCTGGCCCCAAGCAACCATTCTACCATTCCTCACAAGACTTAGGGATGCCCATGCGCCCAAGCCAGAGCTTGATGGGGGTGGGAGGTCCTCCAAGACAGTCTGCCCACCCAGGACATGTTGTAGCTCGACCGGGGATGCCTGGACCAAGTTTGGGAGGGGGTCCAACTAACCACCTCCGGCAAGCATTGCATCAAGTTGCCACTCTTCCTCCACGCATGATGTGTGCCTCTCAACAGCAACCACACTCACAATCCCAGCTGTGGCAGAGCCAACAagggacacacccacacatggaCCCTGTGAACCACCAGCACCTCTTCCCCAGTGGAGGAGCACCTTCGGGCTGTGGAGCACCTCAGTTCCCACAGAGACCAGGTATGCCAGCCAACTTTGCTGCTGCTCGACCGCCACCAAACCAGCTAGCTCCAGGCATGGTAAGCAGACACATGCAAAAGATACCCCCTGGGCAAACTCTTCCCTCCATGAGCCAGCAGAGCCTTAGGATGCGGGATCCTCTGACTGCCATGGACATCATGAAGCCTGGAGCTCCAGCTATGATGGACCCAGCTCATGGCATGGCACCCCCAAGCTATCCCTCAGGGGACAAACACAGTCTGACACGAGGCTACAGTTCTGGACAAAATCCAGGAAGTAAACTACCCTCCTATGACTATCCACCCCAGCACCAGACCAATGGAAGCATGGCTGTAGGACCTCAAGGACCTGTGGGAGCTGGAGGAGTTGGAGGAGGCGAGGTGGACTTCATAGACACTTTAGTGGGTTCCAATGATGACTGGCTCAACAACCTTAACATGATTGATGAATACCTAGAGCAGAACTCATAGGAAAAGTCAATAAATTGTTGGTCAGCTAGAAATCCATTGTTCAAGAAGGTACCAAACCAAGCCTGAATAACTATCCTATACAAGTGAGAACTGATAGGTTGGAATCAGACAATGCCATGTGCCTGTATTGAAGCTGGTCACTGAGATCTGGGCTACTCTTAAACAATTTCGCAGTCCTTACAAGGGTTATTAAACAGTGCCCCTGAAAGGCATTTAAAATAGTCAACACCCAGTATACTGGCTGCCCTAAAGTTCTCACATCAAAAATTGCTCAAGGGTTCTCTCtaaataaatgtgctttaaCTGTCTTTAAGGACAGTTAATAATCTGCTTCCACTGGGCTTGGACACTGTGTAATGAGCTGATTAGTGTTTCCACAGCAAAGCAAACGAGGGCATTCATTCATGAAATATAATAACCTGGTGCAATTCACTTGGACGGACCACATCAAAAAGCTTGATGGCTTGCTTATCACAGTGGAAATACACATGATGTAGTAATATCTCATGTGAGCTGTTTGGTGGTATTTCAAAAGGGGCTTAATAATGTACATGGTAaactattttgtaaaatatgtttttcgTAAACTGTAACATATAAAAGGGAAGTACACATATTTATACTTCTTTTGTGCAAATACATTCTTTAGATTTCCTTtgtaaataatcaaaatgataAGTATATGAAGAAGACGAAAAACAATGTTGTAAAGTAAAACAATTCAATTGATCTTGTAAACTCTATTGTAATTTGTAATATGCAAGACAATATTGTTAGTTTTTGCAGTAATACTATGTATTACAGTGTTGAAATATTTGTTATGGTTTTGACATAACTGGACTTCTGGTACTCCTGtgtggctaaaaaaaaattgtgaggTCAATTTCTGACACTACTTGCACTACAAAAGTCCAGTGGTCCCCTATTTGTGTCTTCTATTCCAACACATTTTGCACTAGACATTGTTCTTGTCTTTGTCATAATCTGTACCATGTGGGGACACCTGCCTGACAGAGGGGTCACATCATATAGGGATTTTATATCTTTAGGCGCAAGTACGTACACATTACTCATCTGTATGTCAACTTTAGTGTACAAAATCTACACTAAGCCTACTCATGTTTTCAGCATTTTGAAAATACCGTACCACCATCCATTATGTAAGAGACTTGCAACAAATACCACTTAAAACTGCATACATTAGCCCCAGTGTTTTGTGCCAGAGTCCTGGGTTTCCCTTTGTTCGTGGTCTTTTGGCTAAGGGCATGAACTTTAGGCCATTCTGATTTGTGCTTTCTCTGTGATTATTCAATTTTGTCTTGTTATTTTTTAGATTGAACAATAAACtgtataaatgc

Function

symbol description
mamld1 Involved in male gonad development. Located in Golgi apparatus; centrosome; and nuclear body. Implicated in hypospadias.

NR:

description
PREDICTED: mastermind-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936021.2 True 4556 mRNA 0.48 5 17208503 17275182

Neighbor

gene id symbol gene type direction distance location
LOC113539921 NA coding upstream 19051 17185021 ~ 17189452 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding upstream 247694 16939461 ~ 16960809 (+)
exoc6b exoc6b coding upstream 287557 16825208 ~ 16920946 (+)
zgc:101765 LOC108267536,LOC108434636 coding upstream 389969 16811400 ~ 16818534 (+)
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding upstream 404487 16776894 ~ 16804016 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding downstream 4304 17279486 ~ 17307870 (+)
mtmr1a mtmr1 coding downstream 33439 17308621 ~ 17329546 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding downstream 130171 17405353 ~ 17419302 (+)
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding downstream 151487 17426669 ~ 17500896 (+)
si:dkey-6n21.12 LOC108267749 coding downstream 233243 17508425 ~ 17520166 (+)
G65663 NA non-coding upstream 437660 16770605 ~ 16770843 (+)
LOC113540742 NA non-coding upstream 446628 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 446856 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 447165 16761266 ~ 16761338 (+)
LOC113540745 NA non-coding upstream 447396 16760981 ~ 16761107 (+)
G65938 NA non-coding downstream 82156 17357338 ~ 17372139 (+)
G65939 NA non-coding downstream 83304 17358486 ~ 17359569 (+)
G65927 NA non-coding downstream 127377 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 135812 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 155895 17431077 ~ 17440372 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 837546 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 889337 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1168519 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2549567 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2939163 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 60315 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 334310 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 724976 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 838251 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 922130 18197312 ~ 18208564 (+)

Expression


Co-expression Network