vgf (LOC108267164)


Basic Information

Item Value
gene id vgf
gene name LOC108267164
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17722149 ~ 17726409 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936031.2
CGAAGACGCGAGGCTACGGCGTGAACAAACGAGTCGTATACCTTTTCACCAAGCAAGTTAATCAAACTGTACATTTACTTTCTAAAAAGAAAGCGTATGTACTAGTAAAGAGAGTAAAGAGAGTGTCCAATCGCGAAGTTCGAAGAACAAAGAGCAAAAGTGCGTCGGACCACGTCACGCCTGGGATCCCGGTGCATCACCATTTTCCACACTCCTAATCTGCATGGTCATGATTCGGTGCCAAAAAGTCTCTAGAGCGCCAGTTGtgcttctcttcttcctcttcagtCTTACATTTGAGCCCACAAATAGCATCCCTGTGACTGAACACAGAGTGGGCAATCGATATGAACCCTCCTCTAATGAACTTACACAGGCACAGATTCAGTTCACCCAAACTAGAGATGTTCTGCCAGGGACACCAATTGAAGAGGAGGATGAACTTTTCAAAGATGTTGACCCAAAAACCCTAGCAGCAGTCCTTCTAGAAGCCCTCAACAAGCCTCAGGAGGTAATGAGTGAACAAGAGAAGAATGGGGGGGAGAAGGACATGGCAGAAGAGGACATAGAGACCCAGAGttttgacagagagagagatgaagatcAGGAGCTGGAACTGGTGCGAGCAGCTGCTGAGGCAAAGggcagagaagagagagaaaaggaacaGGATGAccaagaaagaaaggaacaggaAGAAGAACGCCTCACGGAAAAGGTGACCAGTCACACCACCAGTCAAACAGTGCCCGTAAAAGAACAGGAAGTGGTTACAAAGGAGGTGGCAAGCAAGGAAGAGCAGCAAGAAACAGAGGGAGCCACTGATGGGGACAAGGATGAGCAGCTGAGTCCAGAAGAGTTGAAGAACCTGGAAACCATGTTAGAGGAGTTTCAGAGCTACAGTACAGCCACAAAAAGAGAACGTGATTCCTCATCTGGCCAGAGAGAGAGTCGTGGTGATTACTTTGACTATCTGGATCGTAATGGCCTCATGAACAATGAGATCAAGCCCAAACCTAAGGGTTATGATTTGGCACTGTCTAAGAAGAAGCTTAAGTGGCAGCAAGAGcaggaaaagaacagaaatcGGCCATTGTATAAGGGAGGAAATTTCATGGATGATTTTAATGATAATATTGAAGACCAAGAGGAGGAAAAtggagaggatgaagaggaacTGCTGAGTccagaagaggaagaagctAGGGCTAAAGCTGAACAGGAAGAGGTGCGCAGACAAGCAGCTGAGGCCCAGAGAGCCAAAGCAGAGGAAGAGAAGCTTGCAGATATTGCATCAGACATGATCTTGCAATACATGGTCAAGCAAGATGGGAAGAAGTACCGAGACAATAATGCTGCAGAAGACAAACGATCAGAGGAAGATGGTgccaatgatgatgatgatattgacCCACAAACTATTGACAAATTGATAGAGATCTCCAGCAAGCTTCACTTGCCTGCTGATGATGTGGTAGATATAATCAGTGAtgtggaaaagaagaaaaaaaaagatgctccTGAAACTCTGCAATGGCAACGACCTCTTGTACCTCCTCCAGCACCTGATGTCCCATCTACGGTCTTAAGAACATCATCACCCTCAAAACCACCCAAGCCTATCACGAATGTGCTGAAATCATGGTTCAAGGACAGGGCTCCTATTAAGCCCAGTCAACAAGATTTTTGGATCAAGCAACAGTGGCCCTTTTGGACCTACCCCTCCTATCGGCGCTATCAAAAGCCCTACAGTAGTTATTACACCATCTACATCCCACCTCCCAAGCCTAAACCACGCTACTATGCCAAACCCTCCTACTCCCTTAATGACATTCTGGGGAATTCATTGGACTATGAGTTTGATTACCCTCTGAAACAAAGGTATCGTCCCTGGACACAAAGTCGTCCAAGGGCTCCTCTGGCCTTCCGGAGGAACCTCTACTTCCCTAACTACATTGTCCCTCAACCCCGGACTTTCAAAGCCATACCTATGCCCAAACCCCGGTCACCCCTGCGTCATCGGCCTGCTTTCTATTACTCACCCACAGCTTCTGTAGTTGCCCCACAGCATGGCTATTATGGCCACGTGGAGCAGCCACAGGCAGACAGCAATGAGGAGCTGGGTAACTTCATTGAGAAAGTTTTCCTGAAACGTCCCCGCATGTTTCAGTGAAGGTGTAGATAAAGAAAGAAGTAAAGAGGAAATGTAGTGAGCAAGAATAGCAAAACTGTGAGACTGTTTTTGACACATATTTCGgtttcattttcagaaataagTTTATCCAGTCCAATTTACCTGTCCTTCCCTCTTCagttaaactgaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: myb-like protein X

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936031.2 True 2335 mRNA 0.46 2 17722149 17726409

Neighbor

gene id symbol gene type direction distance location
LOC113539938 LOC108267768 coding upstream 19826 17700478 ~ 17702323 (+)
LOC113539928 LOC108267768 coding upstream 23878 17694648 ~ 17698271 (+)
si:ch211-196f2.6 LOC108267771 coding upstream 40663 17673548 ~ 17681486 (+)
nat16 nat16,LOC107666290,LOC107593751,LOC107750570 coding upstream 57173 17655320 ~ 17664976 (+)
LOC113539967 NA coding upstream 79409 17637548 ~ 17642740 (+)
trnat-agu NA coding downstream 38052 17764461 ~ 17764534 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding downstream 58581 17784990 ~ 17826526 (+)
LOC113539925 NA coding downstream 163074 17889483 ~ 17893961 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding downstream 168491 17894900 ~ 17899493 (+)
tnk1 tnk1 coding downstream 210437 17936846 ~ 17950388 (+)
G66151 NA non-coding upstream 18694 17703234 ~ 17703455 (+)
G66144 snapc2 non-coding upstream 70439 17649365 ~ 17651710 (+)
G66128 NA non-coding upstream 87282 17593632 ~ 17634867 (+)
G66124 NA non-coding upstream 143203 17577104 ~ 17578946 (+)
LOC117597048 NA non-coding upstream 237227 17453446 ~ 17484922 (+)
G66159 NA non-coding downstream 13666 17740075 ~ 17747165 (+)
G66179 NA non-coding downstream 46144 17772553 ~ 17775309 (+)
G66214 LOC108268343 non-coding downstream 146990 17873399 ~ 17877074 (+)
G66169 NA non-coding downstream 178202 17904611 ~ 17919097 (+)
G66186 NA non-coding downstream 247589 17973998 ~ 17975359 (+)
LOC113539940 NA other upstream 102070 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 320761 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1351192 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1402983 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1682165 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 273749 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 387024 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 470903 18197312 ~ 18208564 (+)
G66864 NA other downstream 1130047 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2264275 19990684 ~ 20067220 (+)

Expression


Co-expression Network