LOC113539921


Basic Information

Item Value
gene id LOC113539921
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17185021 ~ 17189452 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936043.2
CTGCGGGTCCAGGTTAGCTGAAAGGTTTCTACCGCCGTACTGAAGAAGAAAACTACACCACCGTTTCCCAACACTTTCAAATCAGGAGAGCTGTTGAGCAGGTGggcagtgggcggagcttagctgagaaatggaaataaaattgcCACACACACGAAGTACCCTGTGAAGCTCGATAATATCAATTATTCTTGTAATTCAGACAGAAGACTAAGCTTCAACTGAACAGGAAAACAGCAATGGCTGCCTCCAGCACTTTTGTATCTGAAGAGCAGTTGCAGTGCTCAATCTGTCTGGAACTATTCACCAAGCCTGTCTCTACTCCATGTGGACACAATTACTGCATGGTTTGTCTcaacaaatactgggacaacAGTCAAAAGTACGATTGTCCATTCTGTAAGAAAGAATTCACCAAAAGGCCAGAACTTTGTGTTAATACATTCATATCTGATCTGGCTGCTCAGTTCAAAGAGTCGGTGAAGGTGCAGTCCAGCGCTCGCACAGCGAAGCCTCGTGCTGCACAGGGACACGTGCCATGTGATGTCTGTCCTGAGCCTACGCAGAAGGCCCTGAAGTCCTGTCTGGACTGTGGTATGTCGTTCTGTGATACACATCTGGAGCATCATAAAATCTCAGCGAAACTTAAGCAACACAAATTAATCGATGCTGTGAAGAACCTGGAGGACTATATATGCCAGAGGCACCAGAGACCTCTGGAGTTGTTCTGTAGGAATgatcagaagtgtgtgtgtctgttctgCACTGAGGGAGAGCATAAGAGCCACAACACCATTCCTATCGAGGAGGAGACTGCAGACAAGAAGACTAAGATGCAGAAAACCCAGGCAGATGTTCAGAAGATGATCCAGGACAGActaaaaaagattaaagaaataaagcattCTGTAACCCTCAAAAAAAAAAATATAGATAAGGAAAAAGAGGACAGCGCTGAAATCTTCAGGTCTCTCATGAGCTCCATCGAGAGAATGCAGGCTGATCTGCTTATGGTGTTggaggagaaacagaaagacataGAAAGGCAAGCTGAAGGGTTTGTTAAAATACTAGAACAGGAAATTGCTGAGTTGAAAAGAAGTGACTTGGAGCTGGAGAAGCTCTTACACTCTGAAGACCACTTCCACCTCCTCAAGGTTTACTTAACATTATTCATCCCTACGTCCACCAGTAACTGGGATAAAATTGAAATTAACAGCAGTTTGAGTGTGGAGGATGTGAAGAGAGATTTGCTTCATCTTCAGCAATCTGTCAACAATACAACTAAGAGGATGTCTGGGTTAAGAACCCTTGATTACCAAAAAGAAGAGATAAAAAGGCTGTTGAAAACTCCATTACGAAAAGGTGACACGTGGTACCTAGTAGACAGCAGTTGGTTCAAAACATGGAAGAAATATGTGGGATTTGATAGCTTCGACACAGCCAGTTTGGGAGGCCAGACAATTTACCCTGGACCAGTGGACAACTTAGGACTCTTAAAAGATTCACTCTCTATCAAGGAGTATCTAATTTGTGAGCTGGACTACATCCTTCTGCCTAAAGAGGCATGGGGTAAACTGATAAGCTGGTATGGACTGACTGAGAACCAGAAGCCTATTGCACGAAAAGTGGTTGAGCAAGGCATGTTTGTGAAGCACTTTAAGGTGGAGGTCTAGCTCACTGAACTGATAGTATGTGAATTGAGCAATATGGACCAAAGTATAAATTGGGACTTCAGCAAAGCAGACACAGTAGCATGTATTGAACAGGAAATGCACAAAATCTTTGATATTCCTGATGGGAAGAAGACCAGGTTGTGGAGTAAGTATATCGCTAATACACTGGAGTGTCTGGACTGCCCTGGTAGCAGCACTCAGGGTGCTGGTCTCTTCCAAGGACAGGTTGTGCTTATAGAACAGAGAAATGAAGATGGGGCATGGCCATGAGATGCAGTTCCACCCCCCTGCCAAAAATCTCAGAAGGGAAACACCTGAGTGGAGCATTATGATCGTTAAAAGAAACTAAATTCTGTTGATTGTTTGttatactttaattttttttatttagcatttatgttCTTTGCACTATATTGGATATATtctattattacatattaattgAAAATATCATTGGGGGCATGGTTTATTGGTCAGCACATTTGCCTTgaacctccagggttgggggatcgattcccacctccgccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0008033 tRNA processing biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936043.2 True 2267 mRNA 0.43 6 17185021 17189452

Neighbor

gene id symbol gene type direction distance location
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding upstream 224212 16939461 ~ 16960809 (+)
exoc6b exoc6b coding upstream 264075 16825208 ~ 16920946 (+)
zgc:101765 LOC108267536,LOC108434636 coding upstream 366487 16811400 ~ 16818534 (+)
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding upstream 381005 16776894 ~ 16804016 (+)
batf2 batf2 coding upstream 408192 16772399 ~ 16776829 (+)
si:ch73-211e3.1 mamld1 coding downstream 19051 17208503 ~ 17275182 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding downstream 90034 17279486 ~ 17307870 (+)
mtmr1a mtmr1 coding downstream 119169 17308621 ~ 17329546 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding downstream 215901 17405353 ~ 17419302 (+)
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding downstream 237217 17426669 ~ 17500896 (+)
G65663 NA non-coding upstream 414178 16770605 ~ 16770843 (+)
LOC113540742 NA non-coding upstream 423146 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 423374 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 423683 16761266 ~ 16761338 (+)
LOC113540745 NA non-coding upstream 423914 16760981 ~ 16761107 (+)
G65938 NA non-coding downstream 167886 17357338 ~ 17372139 (+)
G65939 NA non-coding downstream 169034 17358486 ~ 17359569 (+)
G65927 NA non-coding downstream 213107 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 221542 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 241625 17431077 ~ 17440372 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 814064 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 865855 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1145037 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2526085 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2915681 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 146045 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 420040 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 810706 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 923981 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1007860 18197312 ~ 18208564 (+)

Expression


Co-expression Network