LOC113539922 (snapc2)


Basic Information

Item Value
gene id LOC113539922
gene name snapc2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17648230 ~ 17651920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936044.2
GGGCGTTTTAAGTGCTGTCGGCCTTTTTGGCCTTTCTAGCGACTCGTTTCAAAATACCACTGACAGCAACGAGTCGTTGTTTTGACTTGGTAATCACTTTGCAGTTATCCATCTCCAGCTTGTCATTATGAAGCCTCCATCTCGTCGCCGGATCACACCATCTCGTTTTTTAGAATTAAAGAGGACTGAACCAATAAGCAGGTTCCGTCCTGGGTGCCATCGGCTGGAACAGCGGAGCCTTCTACTTGCCCTGAAACAACAGAACAGGTTAAATACAGAACTGGATTTTTTGGCACTTCAGAAGAAAGTTCCTAAATGGTCTCTGCATCAGATACAAAACATGATAAAGTTTTTGAGGAGGTGTGTGGTGCAGCGGGTGTATCTGCAGGTCCAAAAACAGAGACGTGaggaacaaaacaacaaaataccAATGGAACTATGGGCAGAAGTAGCACAGAAAATGGCTGGTGTCCATGAGGAAACAATATCTTCTGCCTTCTCTCAAATGCTGGTAATTGCTGCCACAGAGCCCTGCAGCCTCCACCACTCAGATCCTCCACGTACCACAGACTCTCAACGTACTCTAGCCAGCGGCTTGCGCACTATACCCCTGAGGCCGATGCCTAAATCCCATGCTGGCTCGCCTCCTCCAGCGATAATTCTGCCTGGACAAGCCTCTAAAACCCCTCAGTCACATGGGAAGGATGCAGCTTCCAACCCCTCTGCCCAAACCACCACAGTAACATCTCCTTCTGCCATTGCTGAAGAGGATCATAGTGAGTTACAACAAAAAACTGAGGCAGACAAAGACTCTGCCATGCCTTCCACATCAACCACCCTTAAATCACTCCTGAGTCAACCTGTCTCAAAACCAACGCCATCACTGTCTGCTTCAAGTGCTGTGTCTACTGCTGCACCCTTGCTCACATCAGACATTGATAAGCAACCTGAAAGTGGACAGTCTGAGCAAGCCTGGCAATATAGACCAATGGGGATGAAGAGTGTAGTGGACTTTGAAAAGATATACCAATTTATAAGCAACATCATTCTCAAAAAACACACTCAGCCTCTTACTGCTATGGAAAGTGCAGTGCTTTTGGACCTGTTGATGTCTTTGCCTGAAGAGCTCCCCTTGCTGGACTGTAAGGAACTGCAGCATCATCTGCTTCAAGTTCACACCCATCTGAACACACCAACAGTGAGCCACAGCACAGATCAGGGACCTGCAGTTGCTAATTCTGCTTCAACTAGAGTAACAGAACAGCAAATTTCCAGAGCTGACAAACATGCTAAAGGACCTGATGTTTCTTTACAAACACAGAGTGTACCATCTACAGGGGAAGAGAGTGTTCAAAAGGGAGAAGTAACTGAGCAAGCAAAGGCTACAGAATCACCATTAGCTGCTGGAGATTTTCCAGGCCAGTCACCTGCAATGAAACTGTCAAAAGACAAAGGTGATTGGGCCACTGCTGGCTTGTGTCCACTAAATCCATTCATGGTGCCAGTAGCCCTCCTGAAACGGCAGTAACCCAAGGAGAGTGCAAAAGCAgctgtgtttttctgatttCAGAACCGTTGATGCTGACAttggtgttttaaaatgatttcatttagAAAATAATATACACCTGCCTTGTTTCAAAGTGCATTGAATGTGATGACATCAGTGAAATAACCTTACATAATTTAATGAAGCTTGTTAGTACAAATTAGGCCTTTAGTATACATTGCACTGAAGACAAATTTTACATATTTCTGATGCAGTAGTGAAGTGGGAGTACACAAgaacacatttaatttataaatgtgatgGATTCACTATTTgaagtttttgtctttttagttaCTAAAGGACACTTTTGTGCACatagttgtgtttatttaataaatatctatTTTTTAGTTAA
>XM_026936045.2
CCTGGGTGCCATCGGCTGGAACAGCGGAGCCTTCTACTTGCCCTGAAACAACAGAACAGGTTAAATACAGAACTGGATTTTTTGGCACTTCAGAAGAAAGTTCCTAAATGGTCTCTGCATCAGTGCTGTGCTTGCTTTTAGATACAAAACATGATAAAGTTTTTGAGGAGGTGTGTGGTGCAGCGGGTGTATCTGCAGGTCCAAAAACAGAGACGTGaggaacaaaacaacaaaataccAATGGAACTATGGGCAGAAGTAGCACAGAAAATGGCTGGTGTCCATGAGGAAACAATATCTTCTGCCTTCTCTCAAATGCTGGTAATTGCTGCCACAGAGCCCTGCAGCCTCCACCACTCAGATCCTCCACGTACCACAGACTCTCAACGTACTCTAGCCAGCGGCTTGCGCACTATACCCCTGAGGCCGATGCCTAAATCCCATGCTGGCTCGCCTCCTCCAGCGATAATTCTGCCTGGACAAGCCTCTAAAACCCCTCAGTCACATGGGAAGGATGCAGCTTCCAACCCCTCTGCCCAAACCACCACAGTAACATCTCCTTCTGCCATTGCTGAAGAGGATCATAGTGAGTTACAACAAAAAACTGAGGCAGACAAAGACTCTGCCATGCCTTCCACATCAACCACCCTTAAATCACTCCTGAGTCAACCTGTCTCAAAACCAACGCCATCACTGTCTGCTTCAAGTGCTGTGTCTACTGCTGCACCCTTGCTCACATCAGACATTGATAAGCAACCTGAAAGTGGACAGTCTGAGCAAGCCTGGCAATATAGACCAATGGGGATGAAGAGTGTAGTGGACTTTGAAAAGATATACCAATTTATAAGCAACATCATTCTCAAAAAACACACTCAGCCTCTTACTGCTATGGAAAGTGCAGTGCTTTTGGACCTGTTGATGTCTTTGCCTGAAGAGCTCCCCTTGCTGGACTGTAAGGAACTGCAGCATCATCTGCTTCAAGTTCACACCCATCTGAACACACCAACAGTGAGCCACAGCACAGATCAGGGACCTGCAGTTGCTAATTCTGCTTCAACTAGAGTAACAGAACAGCAAATTTCCAGAGCTGACAAACATGCTAAAGGACCTGATGTTTCTTTACAAACACAGAGTGTACCATCTACAGGGGAAGAGAGTGTTCAAAAGGGAGAAGTAACTGAGCAAGCAAAGGCTACAGAATCACCATTAGCTGCTGGAGATTTTCCAGGCCAGTCACCTGCAATGAAACTGTCAAAAGACAAAGGTGATTGGGCCACTGCTGGCTTGTGTCCACTAAATCCATTCATGGTGCCAGTAGCCCTCCTGAAACGGCAGTAACCCAAGGAGAGTGCAAAAGCAgctgtgtttttctgatttCAGAACCGTTGATGCTGACAttggtgttttaaaatgatttcatttagAAAATAATATACACCTGCCTTGTTTCAAAGTGCATTGAATGTGATGACATCAGTGAAATAACCTTACATAATTTAATGAAGCTTGTTAGTACAAATTAGGCCTTTAGTATACATTGCACTGAAGACAAATTTTACATATTTCTGATGCAGTAGTGAAGTGGGAGTACACAAgaacacatttaatttataaatgtgatgGATTCACTATTTgaagtttttgtctttttagttaCTAAAGGACACTTTTGTGCACatagttgtgtttatttaataaatatctatTTTTTAGTTAA

Function

symbol description
snapc2 Acts upstream of or within intrahepatic bile duct development. Is expressed in brain and liver. Orthologous to human SNAPC2 (small nuclear RNA activating complex polypeptide 2).

NR:

description
PREDICTED: snRNA-activating protein complex subunit 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936044.2 True 1907 mRNA 0.44 5 17648230 17651920
XM_026936045.2 False 1717 mRNA 0.44 4 17648230 17651093

Neighbor

gene id symbol gene type direction distance location
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding downstream 95090 17540590 ~ 17553140 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding downstream 111457 17533165 ~ 17536773 (-)
cd99l2 cd99l2 coding downstream 304948 17329547 ~ 17343282 (-)
dysf dysf coding downstream 468589 17102529 ~ 17179641 (-)
badb NA coding downstream 825079 16819404 ~ 16823151 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding upstream 85856 17737776 ~ 17747135 (-)
serpine1 serpine1,LOC101154654 coding upstream 96035 17747955 ~ 17751639 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding upstream 113228 17765148 ~ 17769886 (-)
trnas-uga NA coding upstream 119230 17771150 ~ 17771231 (-)
gal3st4 gal3st4,LOC108443973,LOC107593694 coding upstream 191234 17843154 ~ 17853369 (-)
G66274 NA non-coding downstream 10244 17571331 ~ 17637986 (-)
LOC117597047 snapc2 non-coding downstream 55760 17591839 ~ 17592470 (-)
LOC113539942 NA non-coding downstream 194525 17446761 ~ 17453705 (-)
G66056 NA non-coding downstream 244415 17402622 ~ 17403815 (-)
G66028 NA non-coding downstream 337170 17310387 ~ 17311060 (-)
G66310 NA non-coding upstream 34101 17686021 ~ 17686234 (-)
G66311 NA non-coding upstream 34966 17686886 ~ 17687098 (-)
G66318 NA non-coding upstream 44857 17696777 ~ 17701254 (-)
G66349 NA non-coding upstream 147202 17799122 ~ 17812526 (-)
G66350 NA non-coding upstream 149746 17801666 ~ 17809014 (-)
G66281 NA other downstream 13362 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 204042 17439477 ~ 17444188 (-)
G66053 NA other downstream 245766 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1042513 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 1053725 16592562 ~ 16594505 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 140306 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1398230 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2228048 19879968 ~ 19881640 (-)
G67587 NA other upstream 2236259 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2267560 19919480 ~ 19943834 (-)

Expression


Co-expression Network