zgc:77439 (LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018)


Basic Information

Item Value
gene id zgc:77439
gene name LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17765148 ~ 17769886 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936046.2
ctccGGGGCTCATGTTGGACTGGAGTAGTAGCTTCCACTGGCTTGTGTTATAGATCATGGCTGGCTTGCAGAAGCTGCGCGTGGCCGTGGTGGGCGCAGGGGCGGCGGGGCTGTGCGCCGCACGTCACCTCCTCGCGCGCCAGGACCTGTTCGCACCGCCGGTGATGTTCGAGATCACCAAGCACGTGGGCGGCACGTGGGTTTACGAAGAGCGCGTGGGCCGCTATGACAACGGCCTGCCTATCCACAGCAGCATGTACAGGGACCTCAGAACCAATATTCCCAAAGAGGTCATGTCATTTCCTGATTTCCCCTTCGCAAAGCATCTTCCTTCGTTTGTCCATCATACAGAAGTGCGCAAGTACATCGAGCAGTACTGTGATCATTTCCGCCTTTGGGACCACATCAGGTTTGGCACGAATGTGGACGCAGTGGACCCAGTAAACGTGAAGAGTGGCTGGAAAGGTTTGGCATGGGACATCACCAGCAGTGATAGTGTGGACCGGAGCAAATCCATCACAGAGCGCTTTGATGCTGTTATGGTGTGCAATGGACATTTCTTTGACCCGTACATCCCTGATATACCTGGACTGAAGAAGTTCAAAGGTATGTTGATGCATAGCCATGATTATCGGAGTGCAGAGCCCTTCGCAGACAAGTCAGTGCTGGTGCTCGGTGCTGGTCTTTCTGGGCTGGACATTGCTATGGAACTCGCCAACGTCAATGCTAAGGTGATCCTAAGTCATGGTCAGAAGCCCCTGACTTGCCCCATGCCCCAGGGAGTGGAACAGGCTCCTCCAGTAAGCAAAGTGCTGGAGGATGGCACTCTGGAATTTCAGGATGGGAAGCAAGCAGAGCCAGAGGTGTTTTTGCTCTGCACAGGCTATAACTTTGTCTTCCCTTTTCTGAATGAGCAAATCGGAGTGCAGGTGAAAGAGCACTTGGTCTATCCTCTCTACAAGTTTCTGATACCTCCTGCCTATCCATCACTCTTCATTGTAGGCATCTGCAGAGCCATATGTCCCTTTCCACACTTCCATATACAGTCTCAGTTTGCCATCTCTGTGCTGGATGGTTCGTTCTCCCTCCCCTCACGTGAAGAAATGGAAAAGGATTTTGAGCTGGACGTGGCTGCTCGTCGAGCTCGTGGTGTCGCCACCCGACACATCCTCAAACTGGACTCTGAACAGTGGGCCTATAATGACCATTTAGCCCACTTGGGTGGCTTCCAGCCCCTTCCTCGCTACTGGAGCAATCTGTATGAGTCCAACAAGGTTTTCCGTACCCGGGATATGCTCAACTATAAAACCTACAACTATAATGTACTCAGTGAGACAGAGTGGATGGTGCAGAATCTGCAAGGACAACAGGTGGAAAAACCACAACTTAAACATATATAATTAGATCAGTGAAGGCATTTACTATGCACCCTTcaattgaaaatgaatgtaGTAGCTTATTACtatatttgagttactgtgtCAAATTAGTACTTTCTGACTACTGGTATTAGAGACTGATGCCAGTTTAGCAACTTGAACTACTCAGGGCTCAGTGCCACAAAACCAACACAGCAGGGGGTACCATTTATATAATAGAGTGAGCATCTCATTAAACGTTTTCTCTACCATTTTACATGATCTTACCTTTATTATGGTTATAGATAACTCGGCCATATAcattaaaagaaattttaaaaaata
>XM_026936047.2
CATGTGTGTAGGATCATGGCTGGCTTGCAGAAGCTGCGCGTGGCCGTGGTGGGCGCAGGGGCGGCGGGGCTGTGCGCCGCACGTCACCTCCTCGCGCGCCAGGACCTGTTCGCACCGCCGGTGATGTTCGAGATCACCAAGCACGTGGGCGGCACGTGGGTTTACGAAGAGCGCGTGGGCCGCTATGACAACGGCCTGCCTATCCACAGCAGCATGTACAGGGACCTCAGAACCAATATTCCCAAAGAGGTCATGTCATTTCCTGATTTCCCCTTCGCAAAGCATCTTCCTTCGTTTGTCCATCATACAGAAGTGCGCAAGTACATCGAGCAGTACTGTGATCATTTCCGCCTTTGGGACCACATCAGGTTTGGCACGAATGTGGACGCAGTGGACCCAGTAAACGTGAAGAGTGGCTGGAAAGGTTTGGCATGGGACATCACCAGCAGTGATAGTGTGGACCGGAGCAAATCCATCACAGAGCGCTTTGATGCTGTTATGGTGTGCAATGGACATTTCTTTGACCCGTACATCCCTGATATACCTGGACTGAAGAAGTTCAAAGGTATGTTGATGCATAGCCATGATTATCGGAGTGCAGAGCCCTTCGCAGACAAGTCAGTGCTGGTGCTCGGTGCTGGTCTTTCTGGGCTGGACATTGCTATGGAACTCGCCAACGTCAATGCTAAGGTGATCCTAAGTCATGGTCAGAAGCCCCTGACTTGCCCCATGCCCCAGGGAGTGGAACAGGCTCCTCCAGTAAGCAAAGTGCTGGAGGATGGCACTCTGGAATTTCAGGATGGGAAGCAAGCAGAGCCAGAGGTGTTTTTGCTCTGCACAGGCTATAACTTTGTCTTCCCTTTTCTGAATGAGCAAATCGGAGTGCAGGTGAAAGAGCACTTGGTCTATCCTCTCTACAAGTTTCTGATACCTCCTGCCTATCCATCACTCTTCATTGTAGGCATCTGCAGAGCCATATGTCCCTTTCCACACTTCCATATACAGTCTCAGTTTGCCATCTCTGTGCTGGATGGTTCGTTCTCCCTCCCCTCACGTGAAGAAATGGAAAAGGATTTTGAGCTGGACGTGGCTGCTCGTCGAGCTCGTGGTGTCGCCACCCGACACATCCTCAAACTGGACTCTGAACAGTGGGCCTATAATGACCATTTAGCCCACTTGGGTGGCTTCCAGCCCCTTCCTCGCTACTGGAGCAATCTGTATGAGTCCAACAAGGTTTTCCGTACCCGGGATATGCTCAACTATAAAACCTACAACTATAATGTACTCAGTGAGACAGAGTGGATGGTGCAGAATCTGCAAGGACAACAGGTGGAAAAACCACAACTTAAACATATATAATTAGATCAGTGAAGGCATTTACTATGCACCCTTcaattgaaaatgaatgtaGTAGCTTATTACtatatttgagttactgtgtCAAATTAGTACTTTCTGACTACTGGTATTAGAGACTGATGCCAGTTTAGCAACTTGAACTACTCAGGGCTCAGTGCCACAAAACCAACACAGCAGGGGGTACCATTTATATAATAGAGTGAGCATCTCATTAAACGTTTTCTCTACCATTTTACATGATCTTACCTTTATTATGGTTATAGATAACTCGGCCATATAcattaaaagaaattttaaaaaata

Function

NR:

description
PREDICTED: flavin-containing monooxygenase FMO GS-OX4-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0004499 N,N-dimethylaniline monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K00485 FMO; dimethylaniline monooxygenase (N-oxide forming)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936046.2 True 1703 mRNA 0.49 8 17765148 17769886
XM_026936047.2 False 1662 mRNA 0.49 7 17765148 17769226

Neighbor

gene id symbol gene type direction distance location
serpine1 serpine1,LOC101154654 coding downstream 13509 17747955 ~ 17751639 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding downstream 18013 17737776 ~ 17747135 (-)
LOC113539922 snapc2 coding downstream 113228 17648230 ~ 17651920 (-)
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding downstream 212008 17540590 ~ 17553140 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding downstream 228375 17533165 ~ 17536773 (-)
trnas-uga NA coding upstream 1264 17771150 ~ 17771231 (-)
gal3st4 gal3st4,LOC108443973,LOC107593694 coding upstream 73268 17843154 ~ 17853369 (-)
her8a her8a,LOC108267186,LOC108262021,LOC107750660,LOC107563304,LOC107754663,LOC107666285 coding upstream 98741 17868627 ~ 17870914 (-)
LOC113539930 LOC108268343 coding upstream 105281 17875167 ~ 17880384 (-)
mblac1 mblac1 coding upstream 110629 17880515 ~ 17883360 (-)
G66318 NA non-coding downstream 63894 17696777 ~ 17701254 (-)
G66311 NA non-coding downstream 78050 17686886 ~ 17687098 (-)
G66310 NA non-coding downstream 78914 17686021 ~ 17686234 (-)
G66274 NA non-coding downstream 127162 17571331 ~ 17637986 (-)
G66349 NA non-coding upstream 29236 17799122 ~ 17812526 (-)
G66350 NA non-coding upstream 31780 17801666 ~ 17809014 (-)
G66355 NA non-coding upstream 94124 17864010 ~ 17864883 (-)
G66387 NA non-coding upstream 245258 18015144 ~ 18020809 (-)
G66651 NA non-coding upstream 616675 18386561 ~ 18386990 (-)
G66281 NA other downstream 130280 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 320960 17439477 ~ 17444188 (-)
G66053 NA other downstream 362684 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1159431 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 1170643 16592562 ~ 16594505 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 22340 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1280264 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2110082 19879968 ~ 19881640 (-)
G67587 NA other upstream 2118293 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2149594 19919480 ~ 19943834 (-)

Expression


Co-expression Network