LOC113539925


Basic Information

Item Value
gene id LOC113539925
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17889483 ~ 17893961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936049.2
ACACCTTAGTTCACTGCTTCAGGGaacactttattttcattgtcaACAGAGGAAACGATGaaaaaaagaagaacagactCTTCGGGTGAAAACTCATCACCAGTCTCTCAGACAATGTTTCCCATTGATTGGCGAAGCCTGCCACCAAAATTGTCACAGGAATTCCCAGAGAAGGCAACAGCTGCACAATCTGCCCCCTGGAGTAAGCCTACTCTCAGTAATAAGCCTGCCCTGGGGCGAATGCAAAGCCTGGAGGAATGTTTTCAGTTGCTCACAGACATGGCCAAGGAGCTAGAAGATATCAGCAAGGGCAGAAATAAAAGCACACTGGAAAGGTACAAGAAAGTTTCAGGAGAAGACTCTGTGCCAGGAGACGTGGAGAGCAGCAAGAGTCTCATTCTGTCATGGGCTAAAGAAATGGACACGCTCAACATGTCAAGAggagtgaaaaagaaagcatCCTTGAAAGCAGAGGTTACACGAATGAGCAATAACGATGTGTGTGATTTCTCAAAAGACAGGGAGAGGATCATGAAGTGGGCACACGAGTTACAGACTGTCACAGAgaaccTGAGTCTGTTAGATGGAGACTTAAAGCAGATTCTTACTAACCACAGCAAAATGAATAGAAAAGTAGATGAAGTTCTTCCCTTTCTGGAGTTTGTGGTCTGGTCTCTTCTCTCACGTGACTCTGAGgagGATCTTTCAAAAATATGGTTGCCAGCTAAGCAGAGAACATGGAAGACAAGCAGCCAGAAATATATTCCTAATTCAGTTTGGCAGTGGATTCAGAGTGCCTCAGTGGCTGTACATCTAGATTCCAGTTCATGCCACCCCTGGCTGCATGTGTCAGAAGATAAACTGAAAGTGTATGAATTGCCCGAGGCCCCTCGAGGGCAGCAGTGGGACAACCCTCAACAGTTTGACAAGCTGCCGTTCATCCTAGGGCTCAACGGATTCTCCACTGGGAGACACTATTGGGAGGTGGAGGTACCAGCAAAAGGAAAATGGAGGTTAGGGGTAGCAGCTGCATCTGCTCAAAGAAAAGGCCGCTTCCACATTGCTCCAGGAGCAGGGTACTGGACTATTTGTCACAGGTCTGAGAATCTCCAGGCATGCACTGATCCCCGTATCGAGCTACCAAATTCTGTACCTCTTCAGGTGGTTGGGGTTTATGTGGACTGTGAGGAAGGACAAGTGTCCTTCTATAATGCTAACAACAGATTCCATATCTACACTTTCACACAGACTTTCAGAGAAGTGATTTTCCCTGTTTTTGCTTGTCTGGATGGGAACACTGTGCTAAAAATCTGTACATCATAAATCTGTATTTGATGAAAAGCAAAAACTGATGCAAGTTCGAGAGAACTTCAACTGCATACACCACTATTTCTCTGTCCCTAAAATTGCaatgtgcacaggagcattgtcatgctgaaacaggtttgtgccccttagttccagtgaagggaaattgtaatgttataggctacaaagacattatatacaattgtgtgcttccaaatttgcggaaccagtttggggaagaaccacatatgggtgtgacggtcaggtgtctgcaaacttatggccatatagtgtatatgttgGAGAGTTGTATCAGCCTGTCTCTTACCAGTTGAGTTGAGGTGGACaagagaatatgaaaaataaggAACTGATTATACAGACTCGAAATTTAAAGTGGAACAGCACTTATAGTTGTGTTGGAGCTCCTAAACGTGTTAttcaatcataataataatattaatcaatTATAAGTAATGATGTCACATTAAGATGTTAATcactaattataattaattatgttACTGAAGTATGTTAATCCATATTAACATATGGGACATATTAACACATATGTTAAACCAATTAGTCcattatattactgtatattgttaTTCTGTTTACTCAATAGTATATGTAGttattttagatcaaatctatttatagttgcaaaaaaaatatgcttGAAAACATGTTTATTCCAGAGGTGGTAAGATGTTGGGTCAGAGTGACATATGAACTAATATACTGATTTGATGTATTTGTTACATAAAACGAACTGATTCCTGATTTGGTAATTTTAAGTAATTATTAGCATCATTTCAGCTGACCAAATGTGTAAGTTAAAGCATAAAGGTGATAGAAAGTAAATACTTTTGCAGTTAtaattttcctttcttttctcttttccttatatttactttaaacctttttttctaag
>XM_026936051.2
aACAGAGGAAACGATGAATCAATCTTGGGAAGAATATTCTTTTGcctagaaaaaaagaagaacagactCTTCGGGTGAAAACTCATCACCAGTCTCTCAGACAATGTTTCCCATTGATTGGCGAAGCCTGCCACCAAAATTGTCACAGGAATTCCCAGAGAAGGCAACAGCTGCACAATCTGCCCCCTGGAGTAAGCCTACTCTCAGTAATAAGCCTGCCCTGGGGCGAATGCAAAGCCTGGAGGAATGTTTTCAGTTGCTCACAGACATGGCCAAGGAGCTAGAAGATATCAGCAAGGGCAGAAATAAAAGCACACTGGAAAGGTACAAGAAAGTTTCAGGAGAAGACTCTGTGCCAGGAGACGTGGAGAGCAGCAAGAGTCTCATTCTGTCATGGGCTAAAGAAATGGACACGCTCAACATGTCAAGAggagtgaaaaagaaagcatCCTTGAAAGCAGAGGTTACACGAATGAGCAATAACGATGTGTGTGATTTCTCAAAAGACAGGGAGAGGATCATGAAGTGGGCACACGAGTTACAGACTGTCACAGAgaaccTGAGTCTGTTAGATGGAGACTTAAAGCAGATTCTTACTAACCACAGCAAAATGAATAGAAAAGTAGATGAAGTTCTTCCCTTTCTGGAGTTTGTGGTCTGGTCTCTTCTCTCACGTGACTCTGAGgagGATCTTTCAAAAATATGGTTGCCAGCTAAGCAGAGAACATGGAAGACAAGCAGCCAGAAATATATTCCTAATTCAGTTTGGCAGTGGATTCAGAGTGCCTCAGTGGCTGTACATCTAGATTCCAGTTCATGCCACCCCTGGCTGCATGTGTCAGAAGATAAACTGAAAGTGTATGAATTGCCCGAGGCCCCTCGAGGGCAGCAGTGGGACAACCCTCAACAGTTTGACAAGCTGCCGTTCATCCTAGGGCTCAACGGATTCTCCACTGGGAGACACTATTGGGAGGTGGAGGTACCAGCAAAAGGAAAATGGAGGTTAGGGGTAGCAGCTGCATCTGCTCAAAGAAAAGGCCGCTTCCACATTGCTCCAGGAGCAGGGTACTGGACTATTTGTCACAGGTCTGAGAATCTCCAGGCATGCACTGATCCCCGTATCGAGCTACCAAATTCTGTACCTCTTCAGGTGGTTGGGGTTTATGTGGACTGTGAGGAAGGACAAGTGTCCTTCTATAATGCTAACAACAGATTCCATATCTACACTTTCACACAGACTTTCAGAGAAGTGATTTTCCCTGTTTTTGCTTGTCTGGATGGGAACACTGTGCTAAAAATCTGTACATCATAAATCTGTATTTGATGAAAAGCAAAAACTGATGCAAGTTCGAGAGAACTTCAACTGCATACACCACTATTTCTCTGTCCCTAAAATTGCaatgtgcacaggagcattgtcatgctgaaacaggtttgtgccccttagttccagtgaagggaaattgtaatgttataggctacaaagacattatatacaattgtgtgcttccaaatttgcggaaccagtttggggaagaaccacatatgggtgtgacggtcaggtgtctgcaaacttatggccatatagtgtatatgttgGAGAGTTGTATCAGCCTGTCTCTTACCAGTTGAGTTGAGGTGGACaagagaatatgaaaaataaggAACTGATTATACAGACTCGAAATTTAAAGTGGAACAGCACTTATAGTTGTGTTGGAGCTCCTAAACGTGTTAttcaatcataataataatattaatcaatTATAAGTAATGATGTCACATTAAGATGTTAATcactaattataattaattatgttACTGAAGTATGTTAATCCATATTAACATATGGGACATATTAACACATATGTTAAACCAATTAGTCcattatattactgtatattgttaTTCTGTTTACTCAATAGTATATGTAGttattttagatcaaatctatttatagttgcaaaaaaaatatgcttGAAAACATGTTTATTCCAGAGGTGGTAAGATGTTGGGTCAGAGTGACATATGAACTAATATACTGATTTGATGTATTTGTTACATAAAACGAACTGATTCCTGATTTGGTAATTTTAAGTAATTATTAGCATCATTTCAGCTGACCAAATGTGTAAGTTAAAGCATAAAGGTGATAGAAAGTAAATACTTTTGCAGTTAtaattttcctttcttttctcttttccttatatttactttaaacctttttttctaa
>XM_026936052.2
aACAGAGGAAACGATGAATATTCTTTTGcctagaaaaaaagaagaacagactCTTCGGGTGAAAACTCATCACCAGTCTCTCAGACAATGTTTCCCATTGATTGGCGAAGCCTGCCACCAAAATTGTCACAGGAATTCCCAGAGAAGGCAACAGCTGCACAATCTGCCCCCTGGAGTAAGCCTACTCTCAGTAATAAGCCTGCCCTGGGGCGAATGCAAAGCCTGGAGGAATGTTTTCAGTTGCTCACAGACATGGCCAAGGAGCTAGAAGATATCAGCAAGGGCAGAAATAAAAGCACACTGGAAAGGTACAAGAAAGTTTCAGGAGAAGACTCTGTGCCAGGAGACGTGGAGAGCAGCAAGAGTCTCATTCTGTCATGGGCTAAAGAAATGGACACGCTCAACATGTCAAGAggagtgaaaaagaaagcatCCTTGAAAGCAGAGGTTACACGAATGAGCAATAACGATGTGTGTGATTTCTCAAAAGACAGGGAGAGGATCATGAAGTGGGCACACGAGTTACAGACTGTCACAGAgaaccTGAGTCTGTTAGATGGAGACTTAAAGCAGATTCTTACTAACCACAGCAAAATGAATAGAAAAGTAGATGAAGTTCTTCCCTTTCTGGAGTTTGTGGTCTGGTCTCTTCTCTCACGTGACTCTGAGgagGATCTTTCAAAAATATGGTTGCCAGCTAAGCAGAGAACATGGAAGACAAGCAGCCAGAAATATATTCCTAATTCAGTTTGGCAGTGGATTCAGAGTGCCTCAGTGGCTGTACATCTAGATTCCAGTTCATGCCACCCCTGGCTGCATGTGTCAGAAGATAAACTGAAAGTGTATGAATTGCCCGAGGCCCCTCGAGGGCAGCAGTGGGACAACCCTCAACAGTTTGACAAGCTGCCGTTCATCCTAGGGCTCAACGGATTCTCCACTGGGAGACACTATTGGGAGGTGGAGGTACCAGCAAAAGGAAAATGGAGGTTAGGGGTAGCAGCTGCATCTGCTCAAAGAAAAGGCCGCTTCCACATTGCTCCAGGAGCAGGGTACTGGACTATTTGTCACAGGTCTGAGAATCTCCAGGCATGCACTGATCCCCGTATCGAGCTACCAAATTCTGTACCTCTTCAGGTGGTTGGGGTTTATGTGGACTGTGAGGAAGGACAAGTGTCCTTCTATAATGCTAACAACAGATTCCATATCTACACTTTCACACAGACTTTCAGAGAAGTGATTTTCCCTGTTTTTGCTTGTCTGGATGGGAACACTGTGCTAAAAATCTGTACATCATAAATCTGTATTTGATGAAAAGCAAAAACTGATGCAAGTTCGAGAGAACTTCAACTGCATACACCACTATTTCTCTGTCCCTAAAATTGCaatgtgcacaggagcattgtcatgctgaaacaggtttgtgccccttagttccagtgaagggaaattgtaatgttataggctacaaagacattatatacaattgtgtgcttccaaatttgcggaaccagtttggggaagaaccacatatgggtgtgacggtcaggtgtctgcaaacttatggccatatagtgtatatgttgGAGAGTTGTATCAGCCTGTCTCTTACCAGTTGAGTTGAGGTGGACaagagaatatgaaaaataaggAACTGATTATACAGACTCGAAATTTAAAGTGGAACAGCACTTATAGTTGTGTTGGAGCTCCTAAACGTGTTAttcaatcataataataatattaatcaatTATAAGTAATGATGTCACATTAAGATGTTAATcactaattataattaattatgttACTGAAGTATGTTAATCCATATTAACATATGGGACATATTAACACATATGTTAAACCAATTAGTCcattatattactgtatattgttaTTCTGTTTACTCAATAGTATATGTAGttattttagatcaaatctatttatagttgcaaaaaaaatatgcttGAAAACATGTTTATTCCAGAGGTGGTAAGATGTTGGGTCAGAGTGACATATGAACTAATATACTGATTTGATGTATTTGTTACATAAAACGAACTGATTCCTGATTTGGTAATTTTAAGTAATTATTAGCATCATTTCAGCTGACCAAATGTGTAAGTTAAAGCATAAAGGTGATAGAAAGTAAATACTTTTGCAGTTAtaattttcctttcttttctcttttccttatatttactttaaacctttttttctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936049.2 True 2245 mRNA 0.40 10 17889483 17893961
XM_026936051.2 False 2233 mRNA 0.40 10 17889527 17893960
XM_026936052.2 False 2217 mRNA 0.40 10 17889527 17893960

Neighbor

gene id symbol gene type direction distance location
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 62957 17784990 ~ 17826526 (+)
trnat-agu NA coding upstream 124949 17764461 ~ 17764534 (+)
vgf LOC108267164 coding upstream 163074 17722149 ~ 17726409 (+)
LOC113539938 LOC108267768 coding upstream 187160 17700478 ~ 17702323 (+)
LOC113539928 LOC108267768 coding upstream 191212 17694648 ~ 17698271 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding downstream 939 17894900 ~ 17899493 (+)
tnk1 tnk1 coding downstream 42885 17936846 ~ 17950388 (+)
LOC113540162 LOC108268287 coding downstream 72363 17966324 ~ 17968311 (+)
elp5 elp5 coding downstream 98679 17992640 ~ 17998216 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 121168 18015129 ~ 18019079 (+)
G66214 LOC108268343 non-coding upstream 12409 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 114174 17772553 ~ 17775309 (+)
G66159 NA non-coding upstream 142318 17740075 ~ 17747165 (+)
G66151 NA non-coding upstream 186028 17703234 ~ 17703455 (+)
G66144 snapc2 non-coding upstream 237773 17649365 ~ 17651710 (+)
G66169 NA non-coding downstream 10650 17904611 ~ 17919097 (+)
G66186 NA non-coding downstream 80037 17973998 ~ 17975359 (+)
G66237 NA non-coding downstream 96474 17990435 ~ 17992247 (+)
G66263 NA non-coding downstream 197627 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 217724 18111685 ~ 18111915 (+)
LOC113539940 NA other upstream 269404 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 488095 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1518526 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1570317 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1849499 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 106197 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 219472 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 303351 18197312 ~ 18208564 (+)
G66864 NA other downstream 962495 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2096723 19990684 ~ 20067220 (+)

Expression


Co-expression Network