LOC113539928 (LOC108267768)


Basic Information

Item Value
gene id LOC113539928
gene name LOC108267768
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17694648 ~ 17698271 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936056.2
TGGGTGAAGTCCATCTATGAACCACCGTCGCGAGTTTTGCCCAGTTGAACTTTTTCTGCCTGTAATGTAAGGGACATCAGTCATGTTGAGAGACGCAATGGAGGCACAGTTTGTAGAAGAAAGTGATGGTCTAACATTCTGGCTGGCCAGACCACAAGACTATGATGAGGTAATGGCCATATCACAGGACATCTACCAGGGCAATGACTACCTTCCACATCGCTATCACACTTGGATGactgagtgtgagagagtggtCATAATTGGCAGGAGAAATGGGAGGCTGGTAAGAATGGTGGCGCTGGACTCTGCACTGCTGGTTGATGGAGGGCAAACTGTGGTGTTGGAGGGATTAAGGGTGTGTCCTAGTGAAAGAGGACGCGGTGTGGCTGGAGTTATCCAGAGAGTAACTGACTGCTACATTAAGCAGGTTTACCCAAGTGTAACAACCAAACGACTGACAAGACGTGACAACCCAGGACCTGAAAAACTCTCCAAGTTTATTTTTCTGGCTTGCCGGgctatTCTGTCTTTGTTTGGAGAGGCTGAGAGATTTAAAGGATTTGTCTCAGGCCTGAAAACAAAACTGGAAAGCACAGAGAAGTCAGATGGGcccagcagcaacaacaaccaaaaattATTTGTTCTGAAGGACATCCATCAGCTTAAGGCAATACTCCTGGATCCTGATCTTTCCTTGAGACTTCAGCTTCCAGGAGGTGCCATCATCCAAGACTGGCAGCCTCTGAAACCAATGGAAAGCAACCTGGAAATTTTAGAAAGGCGAAACCTAACTTGGATGGTTGACTGTTTTGATGATAAACCAATGTTTATGAGCTTCCACACACCACCCTATCCTGTTCCATTTAATGGAGGTTCTTTGCGGTTCAACATAGACATGTTTGGGACTGATGTATTCATAGCGAAGAAAGCACTGATAGCACATTTAGAGCAGGTAATTGAGGAGATTCATGGCTCTGTTGTGGTTCATGTTTACATGCCTCAAACCTTTTGGGAAGCTATGAGACAGTTTTGTGAGGGAGATGAAGGAGTAAAACAATATATGGATTACTGGGAGCAACTGTTTCTGGAGAAAGAGATAGCATAATTAGTAGACATGGTGAGACAAAGAGATGTATTAGTGGTATCAATGGTGCTAGCGCTCAGAAGAGACAGCACTGAGTATGTTTTTAGTAAATAGAGTTTGTTGATTTTATTGAACAACGTCTGCTATTATTGATCTTTTgcataataattacaaaatacaaatcaaaagatttgcatttaaatatatatggtAGGATTATACAGCCTAGCTGTGAGACCACCAGACACACAATGGTtctatgcattatttttttaatgatcatttCAAACCCTATACCTCAAATATAATAATGGATGTGATGTTCTTTTCATTCTTGGGAATCCTgaaaaaattttaatgttttgttgtaGTTTGCATCGTTGCACACTTGGTGGCGATATGGAACTAGTAATCGAAAACCAAGGCTGATAATTACATGTGAATTTCCTTAACTTATCAGtgcaaataaattcattttaatcagtAAA
>XM_026936057.2
TGGGTGAAGTCCATCTATGAACCACCGTCGCGAGTTTTGCCCAGTTGAACTTTTTCTGCCTGTAATGTAAGGGACATCAGTCATGTTGAGAGACGCAATGGAGGCACAGTTTGTAGAAGAAAGTGATGGTCTAACATTCTGGCTGGCCAGACCACAAGACTATGATGAGGTAATGGCCATATCACAGGACATCTACCAGGGCAATGACTACCTTCCACATCGCTATCACACTTGGATGactgagtgtgagagagtggtCATAATTGGCAGGAGAAATGGGAGGCTGGTGGCGCTGGACTCTGCACTGCTGGTTGATGGAGGGCAAACTGTGGTGTTGGAGGGATTAAGGGTGTGTCCTAGTGAAAGAGGACGCGGTGTGGCTGGAGTTATCCAGAGAGTAACTGACTGCTACATTAAGCAGGTTTACCCAAGTGTAACAACCAAACGACTGACAAGACGTGACAACCCAGGACCTGAAAAACTCTCCAAGTTTATTTTTCTGGCTTGCCGGgctatTCTGTCTTTGTTTGGAGAGGCTGAGAGATTTAAAGGATTTGTCTCAGGCCTGAAAACAAAACTGGAAAGCACAGAGAAGTCAGATGGGcccagcagcaacaacaaccaaaaattATTTGTTCTGAAGGACATCCATCAGCTTAAGGCAATACTCCTGGATCCTGATCTTTCCTTGAGACTTCAGCTTCCAGGAGGTGCCATCATCCAAGACTGGCAGCCTCTGAAACCAATGGAAAGCAACCTGGAAATTTTAGAAAGGCGAAACCTAACTTGGATGGTTGACTGTTTTGATGATAAACCAATGTTTATGAGCTTCCACACACCACCCTATCCTGTTCCATTTAATGGAGGTTCTTTGCGGTTCAACATAGACATGTTTGGGACTGATGTATTCATAGCGAAGAAAGCACTGATAGCACATTTAGAGCAGGTAATTGAGGAGATTCATGGCTCTGTTGTGGTTCATGTTTACATGCCTCAAACCTTTTGGGAAGCTATGAGACAGTTTTGTGAGGGAGATGAAGGAGTAAAACAATATATGGATTACTGGGAGCAACTGTTTCTGGAGAAAGAGATAGCATAATTAGTAGACATGGTGAGACAAAGAGATGTATTAGTGGTATCAATGGTGCTAGCGCTCAGAAGAGACAGCACTGAGTATGTTTTTAGTAAATAGAGTTTGTTGATTTTATTGAACAACGTCTGCTATTATTGATCTTTTgcataataattacaaaatacaaatcaaaagatttgcatttaaatatatatggtAGGATTATACAGCCTAGCTGTGAGACCACCAGACACACAATGGTtctatgcattatttttttaatgatcatttCAAACCCTATACCTCAAATATAATAATGGATGTGATGTTCTTTTCATTCTTGGGAATCCTgaaaaaattttaatgttttgttgtaGTTTGCATCGTTGCACACTTGGTGGCGATATGGAACTAGTAATCGAAAACCAAGGCTGATAATTACATGTGAATTTCCTTAACTTATCAGtgcaaataaattcattttaatcagtAAA

Function

NR:

description
PREDICTED: histidine N-acetyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936056.2 True 1575 mRNA 0.41 4 17694648 17698271
XM_026936057.2 False 1566 mRNA 0.41 4 17694648 17698271

Neighbor

gene id symbol gene type direction distance location
si:ch211-196f2.6 LOC108267771 coding upstream 13162 17673548 ~ 17681486 (+)
nat16 nat16,LOC107666290,LOC107593751,LOC107750570 coding upstream 29672 17655320 ~ 17664976 (+)
LOC113539967 NA coding upstream 51908 17637548 ~ 17642740 (+)
LOC117597112 snapc2 coding upstream 74629 17617159 ~ 17620019 (+)
LOC113539941 NA coding upstream 85170 17604307 ~ 17609478 (+)
LOC113539938 LOC108267768 coding downstream 2207 17700478 ~ 17702323 (+)
vgf LOC108267164 coding downstream 23878 17722149 ~ 17726409 (+)
trnat-agu NA coding downstream 66190 17764461 ~ 17764534 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding downstream 86719 17784990 ~ 17826526 (+)
LOC113539925 NA coding downstream 191212 17889483 ~ 17893961 (+)
G66144 snapc2 non-coding upstream 42938 17649365 ~ 17651710 (+)
G66128 NA non-coding upstream 59781 17593632 ~ 17634867 (+)
G66124 NA non-coding upstream 115702 17577104 ~ 17578946 (+)
LOC117597048 NA non-coding upstream 209726 17453446 ~ 17484922 (+)
G65934 NA non-coding upstream 254276 17431077 ~ 17440372 (+)
G66151 NA non-coding downstream 4963 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 41804 17740075 ~ 17747165 (+)
G66179 NA non-coding downstream 74282 17772553 ~ 17775309 (+)
G66214 LOC108268343 non-coding downstream 175128 17873399 ~ 17877074 (+)
G66169 NA non-coding downstream 206340 17904611 ~ 17919097 (+)
LOC113539940 NA other upstream 74569 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 293260 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1323691 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1375482 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1654664 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 301887 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 415162 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 499041 18197312 ~ 18208564 (+)
G66864 NA other downstream 1158185 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2292413 19990684 ~ 20067220 (+)

Expression


Co-expression Network