si:dkey-6n21.12 (LOC108267749)


Basic Information

Item Value
gene id si:dkey-6n21.12
gene name LOC108267749
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17508425 ~ 17520166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936070.2
GCGAATGAGTGAAATTGGACACCTGGTGATTCTGCTCGGTTCTTTCTCCGCCCCTCACTGAAACAAAACGTTGCGAAATTCCTCAAGTTTTCAGGCGGTCGTGAGCAACTACTTTCCTGGGATTATTAAAGTCGCACACAGGCTTCTGACTTCTTTTACACAGACGCATGggatttgttaataataataatataagctGTCTAACATACCAGGAgcattaaagaaacaaaacgCGGGCAGAAAGAAGTGTGAAAAAAGCGAATGAAGACGGGAGGCGCTTAACGGGACCAAAAGGAGGAGACAACTAACTTCGGGAACGCTATGGGAACTTAGGCCTTTTTATCAACCAGTTTTAAAGCACAAAGATTCTTAACTTCTGCGTTAAAGTTTCGCATAGCCACATAGTGTTCCAGGCATgatggatggagagaaggagagagagagggaaaggggagAGGAAAAGGAGAGTGATGAGACAGAGGAGGATGCTGAAGGAGCAGCCTTGCTGTGGCAAGAAGGCTCCTCTGATGATGACCTAGGATTACCCATCATGCACTGGGAGGCCCTAAGCCTGCGTATTGCCCAACTTGAGAAACAAGAGGAAGAACGAAGAGAGAAGAACAAGGATGTTGCTCAGTGGACAGCGAGTTGGCCAGAGTTGTATAACCTTACCAGACATCAAGATACCTGTGAGGATGTGGATGATAGTCGCCTGACAGCCCTAACGTCCCGACTCCAGAGTCATATGAACCTGCAACTCTGCTTTATCAACaacagtgagagtgaggatgaggaggaggaagacaaggagaaaaaagagTTGAAGAAACACTCTGGGAAACAGATGCAGCAGCCACAGCAGCATTCCAGCACTGCATCCAGCAGCAAAGCCAAACCTGGTGGGTTTAAGAAAGAGGTCAAGGCTGCTCTCAGCATGCTAAGACACAAGCTGAGGTTGGAGCAAAAACAGACCAAACCCCCCAGTGATGCAGTTAAAGAGAGAACTCATTATAATCGCAGCGACTTGCAGAATTTCAGCTTAAAGGAGTTGAATGCACTGAAGACCACACTAAGCAAAGACATTCATAacctcAGCTCTGAGTTAGTGGGCCGACTTCTCACAAGAGACCAGCTAAGAACTGAGCAGGATGCCATGTTGCTGGAGATACAGGATATGACATCACTCTGAGAGAAGTGGTCTTTTACATTAAAGGGACAAAACCAATGCCTCAATAACTTGAGAACTTACAAACCTGGGAGATCTGCCTGGAAGAATTAACTGTACTGTGAAAAGTTTCTCCACACCAAAGGAATGTTTAAGGAATTTAAGGTCTTAAATTGCACAGATTTGTTTCCAAGTTTGCCTTTGTTTTAGCTGCTTTGTAAATTTTTCTGTTAATATGTTGATATAAAGGTGTTGAAAGGCATTGGTAAGCTGTTATTACTAGGACCAACCTCTTCCCAGAATCAAATTGTTTTTGACAAatcattctttttattgttCCAGCCCCTTTAAGTTTGTGTcatatttacaacattttaGTGATGTACTGCATCTATAATTTGATAGTCAGTAGTCTACAGTCACATGCAGACACTTGTAGAGCTAATGGATAAAGCAATAATCTCCTGAAGGGATGACATGTTCCAGTATGTTTCACACCTGTGCTCACAAATGTAAATTATGCAAATTTTCAGTTAGAGAATCAAAGCTGCCTAAAACATGCTCATTAAAGTCTacctaaaataa
>XM_034303569.1
ctttaataacaaataaaacgtACTGGAAATATGCATAGTACAACTAAGTTatattaaacaacatttttattaaaaacatgcaaaaaacgGTTCAGTCAAGACATGTACATGAATCTTACTACTGAGTATTGTGTATGCAGATTATATTTTAAGCTTTTATGAGCTGGATCTGTAAAAAGTGTTCCAGGCATgatggatggagagaaggagagagagagggaaaggggagAGGAAAAGGAGAGTGATGAGACAGAGGAGGATGCTGAAGGAGCAGCCTTGCTGTGGCAAGAAGGCTCCTCTGATGATGACCTAGGATTACCCATCATGCACTGGGAGGCCCTAAGCCTGCGTATTGCCCAACTTGAGAAACAAGAGGAAGAACGAAGAGAGAAGAACAAGGATGTTGCTCAGTGGACAGCGAGTTGGCCAGAGTTGTATAACCTTACCAGACATCAAGATACCTGTGAGGATGTGGATGATAGTCGCCTGACAGCCCTAACGTCCCGACTCCAGAGTCATATGAACCTGCAACTCTGCTTTATCAACaacagtgagagtgaggatgaggaggaggaagacaaggagaaaaaagagTTGAAGAAACACTCTGGGAAACAGATGCAGCAGCCACAGCAGCATTCCAGCACTGCATCCAGCAGCAAAGCCAAACCTGGTGGGTTTAAGAAAGAGGTCAAGGCTGCTCTCAGCATGCTAAGACACAAGCTGAGGTTGGAGCAAAAACAGACCAAACCCCCCAGTGATGCAGTTAAAGAGAGAACTCATTATAATCGCAGCGACTTGCAGAATTTCAGCTTAAAGGAGTTGAATGCACTGAAGACCACACTAAGCAAAGACATTCATAacctcAGCTCTGAGTTAGTGGGCCGACTTCTCACAAGAGACCAGCTAAGAACTGAGCAGGATGCCATGTTGCTGGAGATACAGGATATGACATCACTCTGAGAGAAGTGGTCTTTTACATTAAAGGGACAAAACCAATGCCTCAATAACTTGAGAACTTACAAACCTGGGAGATCTGCCTGGAAGAATTAACTGTACTGTGAAAAGTTTCTCCACACCAAAGGAATGTTTAAGGAATTTAAGGTCTTAAATTGCACAGATTTGTTTCCAAGTTTGCCTTTGTTTTAGCTGCTTTGTAAATTTTTCTGTTAATATGTTGATATAAAGGTGTTGAAAGGCATTGGTAAGCTGTTATTACTAGGACCAACCTCTTCCCAGAATCAAATTGTTTTTGACAAatcattctttttattgttCCAGCCCCTTTAAGTTTGTGTcatatttacaacattttaGTGATGTACTGCATCTATAATTTGATAGTCAGTAGTCTACAGTCACATGCAGACACTTGTAGAGCTAATGGATAAAGCAATAATCTCCTGAAGGGATGACATGTTCCAGTATGTTTCACACCTGTGCTCACAAATGTAAATTATGCAAATTTTCAGTTAGAGAATCAAAGCTGCCTAAAACATGCTCATTAAAGTCTacctaaaataa

Function

NR:

description
PREDICTED: schwannomin-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936070.2 True 1750 mRNA 0.43 7 17513512 17520166
XM_034303569.1 False 1524 mRNA 0.41 7 17508425 17520166

Neighbor

gene id symbol gene type direction distance location
alox12 alox15,LOC108267745,LOC108267744,LOC108434653 coding upstream 7529 17426669 ~ 17500896 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding upstream 89123 17405353 ~ 17419302 (+)
mtmr1a mtmr1 coding upstream 178879 17308621 ~ 17329546 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding upstream 200555 17279486 ~ 17307870 (+)
si:ch73-211e3.1 mamld1 coding upstream 233243 17208503 ~ 17275182 (+)
si:dkey-6n21.13 LOC108267748,LOC108434655,LOC103038466 coding downstream 110 17520276 ~ 17523339 (+)
LOC113539911 NA coding downstream 53424 17573590 ~ 17586296 (+)
LOC113539941 NA coding downstream 84141 17604307 ~ 17609478 (+)
LOC117597112 snapc2 coding downstream 96993 17617159 ~ 17620019 (+)
LOC113539967 NA coding downstream 117382 17637548 ~ 17642740 (+)
G65933 NA non-coding upstream 5780 17410994 ~ 17502645 (+)
LOC117597048 NA non-coding upstream 23503 17453446 ~ 17484922 (+)
G65934 NA non-coding upstream 68053 17431077 ~ 17440372 (+)
G65927 NA non-coding upstream 104546 17402559 ~ 17403879 (+)
G65938 NA non-coding upstream 136286 17357338 ~ 17372139 (+)
G66124 NA non-coding downstream 56938 17577104 ~ 17578946 (+)
G66128 NA non-coding downstream 73466 17593632 ~ 17634867 (+)
G66144 snapc2 non-coding downstream 129199 17649365 ~ 17651710 (+)
G66151 NA non-coding downstream 183068 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 219909 17740075 ~ 17747165 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 107037 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1137468 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1189259 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1468441 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2849489 14632030 ~ 14658936 (+)
LOC113539940 NA other downstream 89326 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 479992 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 593267 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 677146 18197312 ~ 18208564 (+)
G66864 NA other downstream 1336290 18856456 ~ 18858652 (+)

Expression


Co-expression Network