her8a (her8a,LOC108267186,LOC108262021,LOC107750660,LOC107563304,LOC107754663,LOC107666285)


Basic Information

Item Value
gene id her8a
gene name her8a,LOC108267186,LOC108262021,LOC107750660,LOC107563304,LOC107754663,LOC107666285
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17868627 ~ 17870914 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936071.2
TGGTTTGGAGGGGAGGTTTCAGCAGCTACACGTTTAAAACGAGCTGGCACACTCATTTTCCCAGACTAGCAGGCACCATTAACCTACACTTATGAGAAAGTCGCGACGCCAGAAACTGATCACCGCGAGTCTCAGATTTACTTTTACTTTGCGTCAGACGTTTGACAGCCATGACTGCTTCAAATCTCGGCAATGGACCGGAAAAGAGCTTCAGCGCCAAAGAGGAGCGTAAGCTTCGAAAGCCTCTGATAGAGAAGAGACGTAGAGAACGCATCAATTCAAGCCTGGAGCAGCTCAAGGGTATTATGGTGGATGCCTACAATTTGGATCAATCAAAGCTGGAGAAGGCGGATGTTCTGGAGATAACTGTGCAACACATGGAGGGCCTTCAAAGGGGCCTTGGACCAGCGGCCAGTCAGGGACCCAGTGTGGCTTTTGAATCTCGCCAGCGATACAGTAGTGGTTATATCCAGTGTATGCACGAGGTGCATAATTTGCTCCTCAACTGCCCTGGCATGGACAAATCACTGGGCGCTCGTCTTCTGAACCACCTGCTGAAGGCTCTGCCCCAAATCAGTGGAGAGAGCGGTGCCACGGGCAGTGCTGCCACCACCagtcctcttcctcttcccaCCTCGCCTACACAATCTCCACTGGCTCTTCCCTCCTTTCAACCCCGTCCTCTCCAACTACACACCCCTCCCTCTCCTGCGAGCCCCCCCTCACCCAGCAGCCCCCACTGCTCTCCTGGAATTCTCTTGCAGAGAGACGGGGCTGGCATGAGGCCCTCCCCACCCCGATCACCCTCCCCCCAACCTTTAGCCCCTTCTGCCCTTCCCCCCGCCTTCCCAGGGGGTGACCCTTCTATGTGGAGGCCGTGGTGAAGAAGTGAAACCCTCTACCACTTTTCATTTGCCCTTTCCCCCCTTCTTCCACTCTTCCCTAATAGTGTCCATTACATCCTCATCTCCCGGGATGTTTGAGTGCTGGGCCTTTTCACTCTGAAAGCGGAGAGGTCACCGAATAATAGTAGGTCTCCGAGCCCCTGGGGGTTTTGTGGCATCGTTTGAAGCACTATTCTTTATGGTTGATTTACTACGGTGTGGGCTTGTTTGgaaatttgaaaaacaaaagggAACCACCACCAAGGATGCTCACTTAGAATTGAGTGCATGAGAAAAAGAATTGTTGCTTCATTACTTGATTGTACTGTTATTTTGGTAAACCAGGAAGCAATATACTTTGCTtaattgtatttcattttgaaaatatttttaaatggttcTTTGCCTCttatgtttttccttttcactATTTTTAGTGTGGCCATTTCACTAAAGTTTAGTGTGGCCTGATGCATTTTACACTATACCTCTGATCAACTGGTAGTGACTGGTTTCTGCTACAAAATAATGGACAAGTGTTGGAATGTCCTGAATACACTGAGTATGTAAATATGTGCCTGAGATGCCGTGACCTCTGACACTTTTCTTGCTGACACTAGATGTTTAGACTTTACTGATCTCCAGTTGTCTGACTTGGAGCATTTTGTACATAAAATCAAGTTCAGGTGCAaaacatatattatttacatgccCACTCTGTGTGCTGGGTATCAGAATACGCTGTAAACATTTCTGTGAATAAAGACATAAACATCCA

Function

symbol description
her8a Enables DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within glial cell differentiation; negative regulation of neurogenesis; and neuron differentiation. Located in chromatin. Is expressed in several structures, including anterior neural keel; anterior neural rod; central nervous system; neural tube; and posterior neural keel.

NR:

description
transcription cofactor HES-6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050768 negative regulation of neurogenesis biological_process
GO:0042063 gliogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936071.2 True 1662 mRNA 0.48 4 17868627 17870914

Neighbor

gene id symbol gene type direction distance location
gal3st4 gal3st4,LOC108443973,LOC107593694 coding downstream 15258 17843154 ~ 17853369 (-)
trnas-uga NA coding downstream 97396 17771150 ~ 17771231 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding downstream 98741 17765148 ~ 17769886 (-)
serpine1 serpine1,LOC101154654 coding downstream 116988 17747955 ~ 17751639 (-)
ap1s1 ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977 coding downstream 121492 17737776 ~ 17747135 (-)
LOC113539930 LOC108268343 coding upstream 4253 17875167 ~ 17880384 (-)
mblac1 mblac1 coding upstream 9601 17880515 ~ 17883360 (-)
sox19b LOC108267652 coding upstream 34619 17905533 ~ 17907890 (-)
eif4a1a if4a1,eif4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC107599941 coding upstream 41658 17912572 ~ 17918873 (-)
LOC113540701 NA coding upstream 44716 17915630 ~ 17915771 (-)
G66355 NA non-coding downstream 3744 17864010 ~ 17864883 (-)
G66349 NA non-coding downstream 56101 17799122 ~ 17812526 (-)
G66350 NA non-coding downstream 59613 17801666 ~ 17809014 (-)
G66318 NA non-coding downstream 167373 17696777 ~ 17701254 (-)
G66311 NA non-coding downstream 181529 17686886 ~ 17687098 (-)
G66387 NA non-coding upstream 144230 18015144 ~ 18020809 (-)
G66651 NA non-coding upstream 515647 18386561 ~ 18386990 (-)
LOC113539972 NA non-coding upstream 628437 18499351 ~ 18514718 (-)
G67016 NA non-coding upstream 1076404 18947318 ~ 18947539 (-)
G67454 NA non-coding upstream 1457434 19328348 ~ 19340529 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 28712 17792226 ~ 17839915 (-)
G66281 NA other downstream 233759 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 424439 17439477 ~ 17444188 (-)
G66053 NA other downstream 466163 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1262910 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 1179236 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2009054 19879968 ~ 19881640 (-)
G67587 NA other upstream 2017265 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2048566 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 2091668 19962582 ~ 19965851 (-)

Expression


Co-expression Network