ap1s1 (ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977)


Basic Information

Item Value
gene id ap1s1
gene name ap1s1,LOC105921790,LOC107666294,LOC103148860,LOC107593725,LOC108443977
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17737776 ~ 17747135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936078.2
gcgcatgcgcacagGAGGCGCTGACGCTTCCTTTCCAGTCTCAATGGGGCTTTTGAATCCACCGAACTGCTAAGAGTGTGAAATAGACATGAATAATTAGTATTTTGCGTTTCTGATTAAAACGTCTTTATCGTATATTTTGGTTGAACTGGACACTCTTGAGAAGCTGAGAAAATGatgCGTTTTATGCTGTTGTTTAGCCGGCAGGGGAAGCTGCGACTGCAGAAATGGTATACAGCCACAGCTGAGCgtgacaagaaaaaaatggtGCGAGAGCTCATGCAGGTGGTGCTTGCTCGGAAGCCCAAAATGTGCAGCTTCCTGGAGTGGAGAGACCTAAAGATAGTCTACAAGAGgtatgccAGTCTGTATTTCTGCTGTGCAGTTGAAGAGCAGGACAACGAGCTGATTACCCTAGAGGTCATCCATCGCTTTGTGGAGCTGCTGGATAAGTACTTTGGCAGTGTGTGTGAGCTTgacatcatttttaattttgagaAGGCTTACTTTATCTTGGATGAATTTCTGATGGGGGGAGAAATCCAGGACACTTCAAAAAAAAGTGTACTGAAGGCTATTGAACAGGCTGACCTGCTGCAAGAGgaggATGAGTCTCCAAGGAGTGTACTGGAAGAGATGGGTCTGGCATAGAATCTACTGAGTTTTAGAAGGACAGCTTTAGGTACTACTACTGCATTTGGCGAGGGAATGGACTTTATTAGAGTATGTTTGGGGAGGGAGGGTCAAGGATGGCACGAAAAAGGACACACAGGATAGAGGGATGGTTTGAAAGTGTGTATACAGTTTTTATACTACTGAGTTCCGCATGTGATTGTACTTTTTTCAGCCCCATTTGTATTCATAATGTTAAAATAGCTGCGTCTAACCAGGACTCTCTTTCTGAAGACACACTATACAGATTATAGTGTGGGATACAGATTAGACACTTGAACTCGATACACAGCcatttatttgtaatgaaatgaaagtgcATCAAGCCTTACCATGTCAACAAAAGGAGACAATTGCACAATATGCTATTAGTCTATGAGGAGCagttatttatttctgcaaTCTCAAATTAATATATTCAGAAATACTTAGATTGTATTTTTGCTGCTCAGGAAAGATTGGCTGTAACCATTCATGCatgtctatttttaaatgtgatgcaAGATTTAAAGTAGATGACCTATCAGGCCTGAACTGCTTGCTCTGCAGTATAGGGACCACACAGtaaatctgtgtatgtgtgtgagtgtatgtgtaaaaaaagtgtgtgtatgtgtgtttatagtgagtGGGAGGCGTATCTGTGCTCTTCGCTTGCACAGTCTACCATTAAAACAGTTTTCCATGAgccagatttaaaaataaactgtgatGTGTGACATAGGAAATAGAAGAGAAATATTGAATAGGCCTTTGAGTTGGTAGAATATTGAATAGGCTGCTGCATATGGTCTATTCATTCAGTTCTAGTTCTATGAACCACATCTGCAAAGTCactgaatgtttattttaatacaagagggaaaaaatacCCACCAAATGGTACCTAACCTCTTtcctgttttgtctgtttttactTCCTGCTTTCCAAAGAGATGTGTCTGACTGTAAATGCGTAGTCTTGGAATAAAAAGggaataatatttgaataactCCTTTAAAAAATGAGGGCTTTGGCATCATGTATGACGTAGTTAggataaaaatttaaaaataaaaagttttttaatgtattgtctgaaataaaaagaatgttttgagtA

Function

symbol description
ap1s1 Acts upstream of or within extracellular matrix organization and nervous system development. Located in perinuclear region of cytoplasm and plasma membrane. Is expressed in several structures, including hatching gland; nervous system; polster; pronephric duct; and solid lens vesicle. Human ortholog(s) of this gene implicated in MEDNIK syndrome. Orthologous to human AP1S1 (adaptor related protein complex 1 subunit sigma 1).

NR:

description
PREDICTED: AP-1 complex subunit sigma-1A isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007399 nervous system development biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030117 membrane coat cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936078.2 True 1775 mRNA 0.39 5 17737776 17747135

Neighbor

gene id symbol gene type direction distance location
LOC113539922 snapc2 coding downstream 85856 17648230 ~ 17651920 (-)
ache ache,LOC108267799,LOC107668174,LOC107593784,LOC107750572,LOC107749789 coding downstream 184636 17540590 ~ 17553140 (-)
zgc:92664 cssa04h17orf49,clg07h17orf49,LOC108267800,LOC108434657,LOC103038770,LOC107561866,LOC107594707,LOC107668195,LOC107678180,LOC105902403,LOC105027650 coding downstream 201003 17533165 ~ 17536773 (-)
cd99l2 cd99l2 coding downstream 394494 17329547 ~ 17343282 (-)
dysf dysf coding downstream 558135 17102529 ~ 17179641 (-)
serpine1 serpine1,LOC101154654 coding upstream 820 17747955 ~ 17751639 (-)
zgc:77439 LOC108268285,LOC108443975,LOC107666303,LOC107561800,LOC107750567,LOC107669018 coding upstream 18013 17765148 ~ 17769886 (-)
trnas-uga NA coding upstream 24015 17771150 ~ 17771231 (-)
gal3st4 gal3st4,LOC108443973,LOC107593694 coding upstream 96019 17843154 ~ 17853369 (-)
her8a her8a,LOC108267186,LOC108262021,LOC107750660,LOC107563304,LOC107754663,LOC107666285 coding upstream 121492 17868627 ~ 17870914 (-)
G66318 NA non-coding downstream 36522 17696777 ~ 17701254 (-)
G66311 NA non-coding downstream 50678 17686886 ~ 17687098 (-)
G66310 NA non-coding downstream 51542 17686021 ~ 17686234 (-)
G66274 NA non-coding downstream 99790 17571331 ~ 17637986 (-)
LOC117597047 snapc2 non-coding downstream 145306 17591839 ~ 17592470 (-)
G66349 NA non-coding upstream 51987 17799122 ~ 17812526 (-)
G66350 NA non-coding upstream 54531 17801666 ~ 17809014 (-)
G66355 NA non-coding upstream 116875 17864010 ~ 17864883 (-)
G66387 NA non-coding upstream 268009 18015144 ~ 18020809 (-)
G66651 NA non-coding upstream 639426 18386561 ~ 18386990 (-)
G66281 NA other downstream 102908 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 293588 17439477 ~ 17444188 (-)
G66053 NA other downstream 335312 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1132059 16603809 ~ 16605717 (-)
leap2 LOC100304644 other downstream 1143271 16592562 ~ 16594505 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other upstream 45091 17792226 ~ 17839915 (-)
LOC113540242 adamtsl1 other upstream 1303015 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 2132833 19879968 ~ 19881640 (-)
G67587 NA other upstream 2141044 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2172345 19919480 ~ 19943834 (-)

Expression


Co-expression Network