LOC113539938 (LOC108267768)


Basic Information

Item Value
gene id LOC113539938
gene name LOC108267768
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17700478 ~ 17702323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936079.2
TTCACATTTGCTGTTTATCCTCAGAGAAGCAATGGAGGCACAGTTTGTAGAAGAAAGTGATGGTCTAACATTCTGGCTGGCCAGACCACAAGACTATGATGAGGTAATGGTCATATCACAGGACATCTACCAGGGCAATGACTACCTTCCACATCGCTATCACACCTGGATGACTGAGCGTGAAAGAGTGGTCATTCTTGGCAAGAGGAAGTGGAAGCTAGTGGCACTGAACTCTGCACTGCTGGTTGATGGAGGGCAAACTGTGGTGTTGGAGGGATTAAGGGTGTGTCCTAGTGAAAGAGGACGCGGTGTGGCTGGAGTTATTCAGAGAGTGACTGACCGCTACATTAAGCAGGTTTACCCAAGTGTAACAACCAAACGACTGACAAGAAGTGACAACCCAGGACCTGAAAAACTCTCCAAGTTTATTTTTCTGGCTTGCCGGgctatTCTGTCTTTGTTTGGAGAGGCTGAGAGATTTAAAGGATTTGTCTCAGGCCTGAAAACAAAACTGGAAAGCACAGAGAAGTCAGATGGGCCCAGCAACAACCAAAAACTATTTGTTCTGAAGGACATCCATCAGCTTAAGGCAATACTCCTGGACCCTGATCTTTCCTTGAGACTTCAGCTTCCAGGAGGTGCCATCATCCAAGACTGGCAGCCTCTGAAACCAATGGAAAGCAACCTGGAAATTTTAGAAAGGCGAAACCTAACTTGGATGGTTGACTGTTTTGATGATAAACCAATGTTTATGAGCTTCCACACACCACCCTATCCTGTTCCATTTAATGGAGGTTCTTTGATGCTGAACATAGACATGTTTGGGACTGATGTATTCATAGCGAAGAAAGCACTGATAGCACATTTAGAGCAGGTAATTGAGGAGATTCATGGCTCTGTTGTGGTTCATGTTTACATGCCTCAAACCTTTTGGGAAGCTATGAGACAGTTTTGTGAGGGAGATGAAGGAGTAAAACAATATATGGATTACTGGGAGCAACAGTTTCTGGAGAAAGAGATGTCATAATTAGTAGAGATagtgagacagagaatgagagatgTCCTAGTGATATGGAGGATGGTAGAATTCAGAATAGACAGCACTCAGTAGCAATATTTTTAGTAAATAAGGTTCATTGATTTATAGAAATTTACTAGTTAATTGTTATACAGAGTTTCCCAAAGGTCTCCACACaaaaatgtcttcaaaaatTTTTCATGcttagtttatattatgtatattttttccagatagcctttaagaatgaatttgacaaaagaagaatgtattgaaatcattatCATGGATAGATTGGAAAGCTGCATgcaacaccagatgtgttaacacaagttcatcatgagtgggagagacaactctgtgt

Function

NR:

description
PREDICTED: histidine N-acetyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936079.2 True 1382 mRNA 0.41 3 17700478 17702323

Neighbor

gene id symbol gene type direction distance location
LOC113539928 LOC108267768 coding upstream 2207 17694648 ~ 17698271 (+)
si:ch211-196f2.6 LOC108267771 coding upstream 18992 17673548 ~ 17681486 (+)
nat16 nat16,LOC107666290,LOC107593751,LOC107750570 coding upstream 35502 17655320 ~ 17664976 (+)
LOC113539967 NA coding upstream 57738 17637548 ~ 17642740 (+)
LOC117597112 snapc2 coding upstream 80459 17617159 ~ 17620019 (+)
vgf LOC108267164 coding downstream 19826 17722149 ~ 17726409 (+)
trnat-agu NA coding downstream 62138 17764461 ~ 17764534 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding downstream 82667 17784990 ~ 17826526 (+)
LOC113539925 NA coding downstream 187160 17889483 ~ 17893961 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding downstream 192577 17894900 ~ 17899493 (+)
G66144 snapc2 non-coding upstream 48768 17649365 ~ 17651710 (+)
G66128 NA non-coding upstream 65611 17593632 ~ 17634867 (+)
G66124 NA non-coding upstream 121532 17577104 ~ 17578946 (+)
LOC117597048 NA non-coding upstream 215556 17453446 ~ 17484922 (+)
G65934 NA non-coding upstream 260106 17431077 ~ 17440372 (+)
G66151 NA non-coding downstream 911 17703234 ~ 17703455 (+)
G66159 NA non-coding downstream 37752 17740075 ~ 17747165 (+)
G66179 NA non-coding downstream 70230 17772553 ~ 17775309 (+)
G66214 LOC108268343 non-coding downstream 171076 17873399 ~ 17877074 (+)
G66169 NA non-coding downstream 202288 17904611 ~ 17919097 (+)
LOC113539940 NA other upstream 80399 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 299090 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1329521 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1381312 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1660494 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 297835 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 411110 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 494989 18197312 ~ 18208564 (+)
G66864 NA other downstream 1154133 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2288361 19990684 ~ 20067220 (+)

Expression


Co-expression Network