LOC113539949 (LOC108267483)


Basic Information

Item Value
gene id LOC113539949
gene name LOC108267483
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27287161 ~ 27310976 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936091.2
GATCGCGTCGTTTACGAGAAACTCCGCGACGATTTACTTGGAAGCTAGGGCTAGCTGTGTGTGATAATGGACGGTACAGACGTAAAAACGAGTCATATAAACACAGAAATTCATCATTAAACGGTGTTATTTTTATGTCTTTGTGAATAGAACGCTGTTCCGAGGCTCTGCTGATGAAAATAAATCGTCACTGAGTGTGGTGTGAACATCGTAGAAATGGAAGTGGGCCGTCAGATCCTGGGGAAGTTGCAGAGGAGGAAGAAGTCGCAGCTGATGTCAGCTGTGATCCTGCCAGGACTGGAGGTGCACTTTTACCTGGCAGACACGCAACAGATCATCCACCTGAAAGGCTGTCACTCGGCCGAGCAGCTGTGCACCGAAGCCGCCAAGAAGCTGGGTCTTTCTCCATTATGCAGCAGTCTGTTTGCTCTGTACAATGAAACAAACAGGACATGGTTTCCTCCAAATCATGTGTTCATCGTAGACGAGACTACAAGACTCAGGCTGCACTATCgcatgagGTTTTATTTCACTAACTGGCACGGGACCAGGAAGAAACCTCTAGCTGTCGTGCGACACAGTCTCAAACAGACAGGAAACCAGGGGACGGCTCTTCTGGACTCACCGTCACTGACCTACCTATACGCACAGagtCAATATGATTTCCAGAGCGGCTCAGCAGCACTTCGCAGCTTTCAGAGTGAGGAAGATGCCCAGCATATGGAGAATGAGTGTTTGGGAATGGCAGTGATGGCTATTTCCCATGATGCCATGGGCAAAAACCTGCCTGCACGGGAACTGGCTAAGAAATTCAAGTACAAGAACTACATCCCGGTCAGTCTGAACCGCTCCATCTCTCAGAGGAACTTGCTGACGCGCCTGCGCATCTCCAACGTCTTCAAGGCGTTTCTCGAGGAGTTCAACGACAACACGGTGCTGAAGAACAGCGTCAGCAATCACGACTTGAAGGTCAAGTACATTTCCACTCTCGAGACTCTGACCAGACACTTTGGCTGTGAGGTGTACGAACCCTTGTCCGTCAGTATCCACGAGAATGACGAGGTTCCCTGCAGTTCTGCGAGAGAGGACGGAGCTCAGCGTCGCGTGCTCATTTCCGGAACCCGCGGCATTGAGTGGCAGAGCGTGTCTCCTGAGacctgCCCAAATCTACAGAGGAAGAAATCAAAGAGGAACAAAAGTCAACAGGGTCAGCTCAGCGATGTCAGAAAAGAAGACAACTGGACGACGTTCTCGGATTTCCACGAGATCACGCACATCGTCATCAAGGAGGCGCTGGTCACGGTTTACAGACAAGACGACAGGAGGATGGAAGTGCGCTTCGCTGGCCGTGAGGAGGCCCTGGCCTTCACCAGCCTGATAGACGGCTACTTCAGGCTCACTGTGGACGCACATCACTTCCTGTGCACTGAGGTCGCTCCCGTCTCCGTAGAAACCAACCTACGTGAGGGATGTCACGGACCAATCAGCACCGAGTACGCTGTTCATAAGCTCAAACAGGAAGGTTACGAGGAGGGCATGTACATCCTGCGCTGGAGCTGTGCTCATTACGACCACGTCCTGCTCACCGTCATCTGCAATGAGAGAGACGTCTCAGGTGAGATCATCAAGACCTTCAAGAATTTTCAGATCGAGAGGACTGAGGGTGGATTTCGTCTCTGTGGGACGGACGTGGAGAAACCCACACTGAGGGAACTGACCGACCGGCTGTGTGGTCAGTGTCTGAGTACGGACAACACCACTCTGAAGCTGGCACGAGGTTGTCCTCCTCAGCCTCGAGAGCTGTCTAATCTCCTGATGGTGACGAGGTCGGACTCCATCACTCCGCCCTCCGTGAGCCACCTTGTCTTAAACCCCATCAAGAAAGAGAACATCGTACAGGACAAGCACTTGGGGAAAGGAACTCGTACAAACATATACTCGGGCACGCTGAGGCCGAAGAGCGATGAGGACAGTCTGATCAGCTTCAGCACTGAGGATGTCCCTGTGGTCCTGAAGGTGATCGGAACAGGACTTAAGGATGttgcaGCCTTTTTGGAAACTGTGAGTCAGATGCGTGAgatctcacacaaacacatgacacATCTGTATGGCATCTGCATGTACAGCATGGACATCATCATGGTGGAGGAGTTTGTGAAGCACGGACCTCTGGATCTGTTCATGCGCGCTCATCACGCTGAGCTCACGCCGTCCTGGAAGTTTCAGGTTGCCGAGCAGCTCGCTAGCGTCCTCAGCTATCTGGAGGATAAGAAGCTCGTCCATGGCTACGTGTGCACAAAGAACATCCTGTTAGTGAAAGATGGTCTGGATGGACAACAAGCTCCATTCATAAAGCTCAGCAAGCCGGGAGTCCCGATCACTACGCTCAACCGAGAAGAGTGTATCGACAGGATCCCATGGATCGCTCCGGAGTGTGTGAAGAACCCTAAAGCACAGACCGTGGCTGCGGATAAGTGGGGCTTCGGGACGACGCTGTGGGAGATCTGCTACAACGGAGAAGTGCCGCTCAGGGACAAGAAACGTGCCGAGAAGGAGTGGTTCTATGAAGCCAAGGGCACACTGGTGATTCCCAACTGCAGTGAACTGGCCGAGCTCATCACCCAGTGCATGAACTATGACCCCAAAAAGAGACCGTTCTTCAGAGCCATAGTGCGAGAACTGGACCGTATCAAGGAGCAGAACCCGGCGATGGTGTCAGGTGGTGTTCCTGTGCAGGAGATCGACCCCACGCTGTTTGAGAGCAGATTCCTCAAGACAATACGGGACCTGGGAGAGGGTCACTTTGGGAAGGTGGAGCTGTGTCAGTACGACCCACACGGAGACCGCAACGGTCAGATGGTGGCTGTCAAGTCGCTGAAGTCTGAAAGTGATGGACCTGAGAGCAGCAACCTGAGGAGAGAAATCAGCACCATGAGAGAGCTTTACCACACCAACATCGTCAAGTACAAAGGCATCTGTACTGAGGAAGgtgggaGAACGATTAAACTGATCATGGAGTATCTGCCTGCTGGGAGTCTGAAGGACTATCTGCCCCGACACAAAGCTCAGACAAGCCAACAGCGCCTGCTGCTCTACGCCATCCAGATCTGTCAGgGAATGGACTACCTGGGCTCTCAGAACTACATCCACAGAGACCTGGCGGCTCGTAACGTGCTGGTGGAGAGCGAGACACTGGTCAAGATCGGAGACTTCGGTCTGACGAAGAGCATCAAAGACAATGAGGAGTACTACACGGTCAGGGAGGAGCAGGACAGTCCGGTGTACTGGTACGCACCTGAGTGTCTGATCCACCGAAAGTTTTACAAAGCCTCAGACGTCTGGTCTTTCGGAGTCACACTGTACGAACTCATGACCTACTGTGACCGCAAGATGAGTCCTCCTGAGATGTTCCTGAACACGATTGGCCGATCGCACGGTCAGATGACAATGGCGAGACTGGTGAAGGCTCTGGAAGGTGGCTGGAGGCTGTCCTGTCCTACATCTTGCCCAGATGTGGTGTACACACAGATGCGGAGGTGCTGGGTTCACGCTCCAGAGGACCGTGTAGACTTCAAAGGCCTGATCGAGGTGTTCGAGCGTCTCTTGTCGAGCGAAGAACTCAGTTTAGTGCACAGCTGTTAAATCgctcactttttaatacttttactGTCATGCATATCGTGTCTTATCTTTTTTTAAGGCCTGAACTCATCCAAAATTATTCATTGGCAATAGAGCAGGTTGTATTATTACATCTGAAGACCTCTGAGCACTTAAACAGTCAGAATCTggtcaaattaaaaataattagaagAATAATTATCCTTGGGGTGATATACTTTTACATTAGATGTTACATGTTCATATATCCATATAAAAGTCCACAATAATACCCTAAAAGTGTTCTTATTCTGCAGGATTTTAAGCAaactcactcattagggatgtCTTTTCAGACATTACAGCTGTAATCAGTGATGTTTGAGTTAGGACATCTCCTCAGAGGAGAAACTTTGACCTCCATAGCGCTCCAgaatataaacaaaagaaacaagatGTGGACCACCGacaattaaccaatcaggacaaagaAAGCCCCACAGCTTGCATTAGCATTTGGACAGTACACGTGCATGTTTAAGGGGCATGGCTTTGGAGAGGACACTGAGATCCTTTTGATTTATGAAACAGCCCGGCTAAAATCGTTGATTGTGCCTTTAAGGCAGTTTATTTAAAGTATGTCACGACAGAATCAGACTGAGTTACTAagatttatttgatttactttaaacagtaaaatgcTCTGGTGTGTAAATCATTATTCTGTACAAAGACAGTGGAGGAAAATTGTTCTGTGTACGAAATAATGAATGTATGTGGTAACTGATTTAAAGTCGATTTAGCCCAGTGTCACTAGTTTTACAAGAACCATACTACATTCTATACAGCTACATTcttacttttaaaaaacaaacaaacaaaaaagtaacaatttttctaaataaagcATGGTCTGCAATTTGCCAGTTTATTGGTTACGAATTGCCAGTTTATTGGTTTATCTATTACTTGCCTGTGTATTTAGCATATAGTGGTTGCGTGTGCATATAGTGGGACGTGatttataaattattgtttGCATTAATAACATCATGTGCTAAGTCAGGGAAGGAAGCAATATTTAAACAGGATTTTTGTGTGCGCTAATTGTTCTCGATAGCTGTGAGTTCAGGTCTCAAAGAGACATCTGTAAGAGTGAAACTAAACCTACATTGAAATTACATGTCAAGTATAATGCTGGTTAAAGGCAGTGAGTCAGAAAGCTGttcaaaattaaatatgaatgtaaaataagAGTGCAGATATTagcatgtgtgtttataagGTAAATTAAAATGCTTTCGATGTCGGAGGTGTAAGTATGAAACAAAATTGTTCGAAGTTAAGTTTTGAGAAATTGGTTATTTTTGAGAATGCTGAGACATAATTTGgagaaatgatttttaaaaatggtcatAGTTGTATTTTACACACAATCTCTGTTCCTTACTTTCATGTCAGGTGATAAATTAATCTATTCGCCTTGACTCCACACACTATTTTAAACTTTTAGGTGAAAACTACCCCAAATTACAAAAACAGATTGTGTGAAAGACGCAGTTCTCCATAGgagtttttttctgtattgtttttACTTGAtcttaacatttaataaatcaggtgaaaaaaatctgtggtGCTGCATTATGCGAAACAGTGGCATGATATTATGAGACAGCTGCTGTCGCATACTTAGATTTGAGTTTGGGATAAACACCATGACCTATAAAATCTGCTTCTTCCCATTCCTCCTGTGCCAGTTGATGTATAATCGATTACTGGCACATCCCGGCTTTACACTTAACATTCGTCACGCTCCCTGGTATGGAAGCTTGATTCTACCTcatatgagaaaatattatgCAGAAAATGATCTTGCAGTTGCGAGGTAATATCATGCCCTtgcgacttttttttaaaatctagtacttgtgttattttttttctacttgttaatatcacacacacgTGACTTAGTGCTTCCGTTTCCAATAATCAAACCACAACAACACAAGCGTACGCAGCAGTGCGTAAGCAAGGGATATAAATAGTTTAGTTATGGGTTAAGGATACTCTAATAAGCGAAAGCAAAATGTCACACTAATTAACAATTGTGAGATAAAAAGTTGCAAATGTGAGAGATTAACCTTCAGGATAAAAAGTCACAGTTGCGAGATaatctgtgtaatattttcCCATGTGTGGCAGAATCAGGCTTCCATTGCCACCACACCACTGCCACTATACCATTGCCATTTTGCCtttaagtatatttttttatgttttacataGATCTATTAAATTATGCGTCATGTTAACTTCTGCAGTTTGCACAGAATCGTCAAATAGCAGGTATAGGGTTCTGGACATTATCAATAATCAAACGTGATGTTCCAATTTGCTGCTTTGTTATTGACGTCTTTGTcaaattcattaaaacattattaaaattctctttattttcttgg

Function

NR:

description
PREDICTED: tyrosine-protein kinase JAK1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936091.2 True 6068 mRNA 0.45 24 27287161 27310976

Neighbor

gene id symbol gene type direction distance location
LOC113540236 LOC108267484 coding downstream 25260 27237944 ~ 27261901 (-)
LOC113540028 NA coding downstream 129146 27153499 ~ 27158015 (-)
cfap57 cfap57 coding downstream 143310 27108812 ~ 27143851 (-)
tmem125b LOC108267439 coding downstream 178750 27105494 ~ 27108411 (-)
LOC113540546 NA coding downstream 304952 26981189 ~ 26982209 (-)
si:ch211-107p11.3 LOC108267482 coding upstream 70199 27381175 ~ 27385533 (-)
insl5b LOC108268041 coding upstream 102480 27413456 ~ 27414564 (-)
cmpk cmpk1,cmpk,LOC107719256,LOC107681787,LOC107559368,LOC107671754 coding upstream 122716 27433692 ~ 27441494 (-)
slc35a3b LOC108267645 coding upstream 136279 27447255 ~ 27455713 (-)
acbd5b NA coding upstream 173801 27484777 ~ 27494927 (-)
G71955 NA non-coding downstream 463 27286239 ~ 27286698 (-)
G71952 NA non-coding downstream 3504 27281049 ~ 27283657 (-)
G71951 NA non-coding downstream 7794 27277017 ~ 27279367 (-)
G71950 LOC108267486,LOC103364420,LOC106568718 non-coding downstream 12654 27274181 ~ 27274507 (-)
G71918 NA non-coding downstream 72762 27214152 ~ 27214399 (-)
G72073 NA non-coding upstream 90694 27401670 ~ 27402635 (-)
G72074 NA non-coding upstream 92161 27403137 ~ 27406819 (-)
G72094 NA non-coding upstream 133767 27444743 ~ 27445114 (-)
G72517 NA non-coding upstream 258268 27569244 ~ 27970795 (-)
G72607 NA non-coding upstream 601894 27912870 ~ 27958488 (-)
G71909 LOC108267490 other downstream 82975 27203783 ~ 27204186 (-)
G71832 NA other downstream 186303 27096602 ~ 27100858 (-)
G71596 NA other downstream 736131 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 910753 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2701113 24565741 ~ 24586048 (-)
trnat-ugu_3 NA other upstream 84381 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 85175 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 104291 27415267 ~ 27432678 (-)
tsen15 tsen15 other upstream 163789 27474765 ~ 27483833 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other upstream 236776 27547752 ~ 27555987 (-)

Expression


Co-expression Network