LOC113539955 (LOC108267556)


Basic Information

Item Value
gene id LOC113539955
gene name LOC108267556
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16552388 ~ 16564137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936098.2
AGTGTAACAGGAGGGATGATGTTACAATTGCAAGTGTAGATCCCCTTGTTGGTGATGGACACGCTGTGTGAACTCTTTACAAAGTAGTACGAAGTACCAAGGTTAAGCACATGTCTCTTCTATGTGTATGTGCTGACTTGACTGAGTTTGCTGTAAGGCAATATAAGGTACATGTGCAAAGCCACACGTACCAATTAATCAGACGCCTGAGTGTCGTAAACTAACCTTCTCACAGCAGGGATGTAGTTATGCACAGCGTTGTATTCTCCTGccaggacaccagtccattcaGAGAATTACCACTTGGTCCGGTGCTCAGGACCTGGTCGTCACGGTGACAGTGAGCAGCTGCTTCAACAACATGGTATGATGTTAGGGATAAGCTGATGAAGGTGTATAGATGGCTGGATATAGCTGAGCTCTGGGAGAACACGTTGAAGAGACAAAGTCACCGAGACGAAGGAAAAGGGATGCCAGAGAGAGTTTGTCTGTTTCATGGTCAGAACTATCACAAGCTGAAGCGAGCATGTTTGAGGCATGGAGCACTTTTTAAAGACCCACACTTCCCTGCCTGTACTCAGTCATTGTTCTACAAGAGAACACCACCTCCAGGACTCACATGGAAAAGACCACGAGAATTGTGTAAAGACCCAAGACTTTTTGTGGATGGAATCAGTACCAGAGATCTGCACCAGGGCAGTCTGGGTAACTGCTGGATGGTGGCAGCGACTTCTTGTCTTGCAACAGAGCCATCACTTTGGAAGAAGGTCATCCCAGATCACATGGAGCAGGAGTGGAACCCCAAGCGTCCACACCTGTATGCAGGAATTTTTCACTTCCGCTTCTGGCGTTTGGGTCAGTGGATGGATGTGGTGGTGGATGACCGCTTACCGGTCAGTGAGGATGGAACTCTGCTCTTCTGTCGCTCAGCCACACCACGAGAGTTTTGGAGTGCCCTGCTGGAGAAAGCTTATGCCAAGCTCAATGGCTGTTATGAAGCCTTAGAGGGAGGAAACACTGCAGAAGCTCTGGTAGATTTCACTGGAGGAGTATCTGAACCACTGAGTTTGGATGGAGAGACATTGAGCCAACATGGCGACCAAAGGAGGGTGCTGTTTCAGATGCTAGCCAGAGCACACAGCTGTAAAGCTCTCATCACATGCTCTATACGGCCAGCAGAAGGAGAGCAGGTTGAGTCTGTGCTGGAATGTGGTTTAGTGAAGGGCCATGCATATGGTATAACTGCACTTAGGAAGATTCGTGTTGGGGAAAATCTACTAGCTGTTTGTGGGACATCCCGGCTGTACATGGTGCGCATGAGGAACCCATGGGGCACAGCGGACTGGACCGGAGCCTGGAGCCAGGGGTCACAGCAATGGCAGCAAGTGGGCCGCtgcgagagagagaagatgggGCTGATTGTCAGAGATGTGGGAGAATTTTGGATGGAGTTTGAGGACTTCTGCCACTACTTCACAGATATGGTGGTGTGCAGGCTGGTGGAACGATGCCTACTCTGGCATTGGGGTCACTGGAGAGAGACACATTGTACTGGAGAGTGGACTCATGCTCCTCTAGACTCAACAAGACCAACTGCTCCTCGAGCCTCCAACACCCAGAAGGTCTCCTCAAGTTCCCAGTGGTCTCTTCCAGCTACTGCCCCAAGAGGAGATAGGAAAGAAGAAAGGCTGAGTGAAAGGCAGCTGCATGAAAGGAGGGACCACAcagtgaaagagaagaaagcTAAAGGTGAACAGAAAGCTGGGCCAACAcaaagaggagagaggacaACAAAGGAGAATGAAGATGAGTTTCAGGGAAAAGAGGAAGGAGTGGTGGATGAAAgttgggagagagagatggacaggaGAAGTAGGTGCGGGGGGTGTATTAACCACACAGAGACATTTCTTCGTAACCCTCAGTTCATGTTCGAGCTGGGAGGAGAGGGGGATGAGGTGCTCATATGCCTGCAGCAAGAAGACAGAAGAATGAAACGGAGGGAAGGAGGAGGTGAAAATCTTCCAATCGGCTTTGAGGTGCTGAGGGTCGAGGTGAACCGTATGAGTAGGGTGCAGTGTTTTACTGAGCAGGCAGCCAGTTCAGTCTACATGGATTCACGTAGCATTACCCTGCGTGTAACCCTTGACCCTGGGCGCTATGTCCTCCTACCAACCACCTTCCAGCCTGGGGTTACTGGCCGCTTCCTTCTCCgcctcttctcacacacacatgtcaaaCTCAGgGAGCTGAAGGAGGAGTTGCCTGCTCCCTCTCTGTGGCAGTGTTGTCTGCGTCAGCCAGGTGCTGTTGTTACAGTACACCTTCACAGAGCCTCCACGCTCAGCAAGCCCAAACATCCAGctccagatgTATATGCTCTCATTAGGTGTGAGGAGGAAACTATAAAGACAcgtgtatttaaaaaagatgGAAATCCTGAATTTAACACTAAAGCCATTTTCTACAGGAGGAAACCTAAGAGGAAAATCTGCTTAGAGCTATGGGGAAGAGGCTTGCTATTTGACTCCTTCCTGGGAAGAGCTTATCTTCAAACAGGGGCCAGTGAACGAGGGCGGACCAGAGTGATTGAACTGCAAGGTGGTCAGTCTCGTGGCTGCATCTATGTAGAGACTTCCACCAGTCAGTGCCTGACAGACTTATGACTTTTCCATTGACTTATACAGTGGAACTGAGCTATTGCTAAAATCTGAAAACTGACTAGAAAAGCCAGCTTGGGACCAGacttctgcaagtttctccTTTATAGTCTGGTATTCTCATGCACTTGcctgcttctgattggtcagaaaccTGCTTTTGTTGAGTGGTATAGCAGGTACTGTAGAATGAATATGTGTGCATAGTGTCTTTTGTTGTGATTGTAGGAAGTGAATCTGTGTCAGCCTGGCCTTAGGCTAAGGGGAAAGTTTTAGCTATTACAACAGTGCTCACAAAATGTTGTTCATCCATGGTGCTTTTGAATATCTCATTAGTCCAAAGTAAGTAAAAGAGCATTTGCTATTATGTGTGTTAGGCTAGCAGTTAGTTAAGGTAATAGTTAAGGTTGCACAGTTATCTGCTGGTCAGATATTAAAAGCAAAACCTAAAATTCACATAAGGACACTGTTGATGTTGACAATGATGTTCATGTAATCAGGCCtctgaaaacatttcaaacatttttttaacaataaaaatagtag
>XM_034303424.1
TTCCTGTCATGCTCTTAGCTCAGCTGAAATATAGATAGCAGACTTTTGAGCATTTCATTCCTATTCCCAGCTGCTTCAACAACATGGTATGATGTTAGGGATAAGCTGATGAAGGTGTATAGATGGCTGGATATAGCTGAGCTCTGGGAGAACACGTTGAAGAGACAAAGTCACCGAGACGAAGGAAAAGGGATGCCAGAGAGAGTTTGTCTGTTTCATGGTCAGAACTATCACAAGCTGAAGCGAGCATGTTTGAGGCATGGAGCACTTTTTAAAGACCCACACTTCCCTGCCTGTACTCAGTCATTGTTCTACAAGAGAACACCACCTCCAGGACTCACATGGAAAAGACCACGAGAATTGTGTAAAGACCCAAGACTTTTTGTGGATGGAATCAGTACCAGAGATCTGCACCAGGGCAGTCTGGGTAACTGCTGGATGGTGGCAGCGACTTCTTGTCTTGCAACAGAGCCATCACTTTGGAAGAAGGTCATCCCAGATCACATGGAGCAGGAGTGGAACCCCAAGCGTCCACACCTGTATGCAGGAATTTTTCACTTCCGCTTCTGGCGTTTGGGTCAGTGGATGGATGTGGTGGTGGATGACCGCTTACCGGTCAGTGAGGATGGAACTCTGCTCTTCTGTCGCTCAGCCACACCACGAGAGTTTTGGAGTGCCCTGCTGGAGAAAGCTTATGCCAAGCTCAATGGCTGTTATGAAGCCTTAGAGGGAGGAAACACTGCAGAAGCTCTGGTAGATTTCACTGGAGGAGTATCTGAACCACTGAGTTTGGATGGAGAGACATTGAGCCAACATGGCGACCAAAGGAGGGTGCTGTTTCAGATGCTAGCCAGAGCACACAGCTGTAAAGCTCTCATCACATGCTCTATACGGCCAGCAGAAGGAGAGCAGGTTGAGTCTGTGCTGGAATGTGGTTTAGTGAAGGGCCATGCATATGGTATAACTGCACTTAGGAAGATTCGTGTTGGGGAAAATCTACTAGCTGTTTGTGGGACATCCCGGCTGTACATGGTGCGCATGAGGAACCCATGGGGCACAGCGGACTGGACCGGAGCCTGGAGCCAGGGGTCACAGCAATGGCAGCAAGTGGGCCGCtgcgagagagagaagatgggGCTGATTGTCAGAGATGTGGGAGAATTTTGGATGGAGTTTGAGGACTTCTGCCACTACTTCACAGATATGGTGGTGTGCAGGCTGGTGGAACGATGCCTACTCTGGCATTGGGGTCACTGGAGAGAGACACATTGTACTGGAGAGTGGACTCATGCTCCTCTAGACTCAACAAGACCAACTGCTCCTCGAGCCTCCAACACCCAGAAGGTCTCCTCAAGTTCCCAGTGGTCTCTTCCAGCTACTGCCCCAAGAGGAGATAGGAAAGAAGAAAGGCTGAGTGAAAGGCAGCTGCATGAAAGGAGGGACCACAcagtgaaagagaagaaagcTAAAGGTGAACAGAAAGCTGGGCCAACAcaaagaggagagaggacaACAAAGGAGAATGAAGATGAGTTTCAGGGAAAAGAGGAAGGAGTGGTGGATGAAAgttgggagagagagatggacaggaGAAGTAGGTGCGGGGGGTGTATTAACCACACAGAGACATTTCTTCGTAACCCTCAGTTCATGTTCGAGCTGGGAGGAGAGGGGGATGAGGTGCTCATATGCCTGCAGCAAGAAGACAGAAGAATGAAACGGAGGGAAGGAGGAGGTGAAAATCTTCCAATCGGCTTTGAGGTGCTGAGGGTCGAGGTGAACCGTATGAGTAGGGTGCAGTGTTTTACTGAGCAGGCAGCCAGTTCAGTCTACATGGATTCACGTAGCATTACCCTGCGTGTAACCCTTGACCCTGGGCGCTATGTCCTCCTACCAACCACCTTCCAGCCTGGGGTTACTGGCCGCTTCCTTCTCCgcctcttctcacacacacatgtcaaaCTCAGgGAGCTGAAGGAGGAGTTGCCTGCTCCCTCTCTGTGGCAGTGTTGTCTGCGTCAGCCAGGTGCTGTTGTTACAGTACACCTTCACAGAGCCTCCACGCTCAGCAAGCCCAAACATCCAGctccagatgTATATGCTCTCATTAGGTGTGAGGAGGAAACTATAAAGACAcgtgtatttaaaaaagatgGAAATCCTGAATTTAACACTAAAGCCATTTTCTACAGGAGGAAACCTAAGAGGAAAATCTGCTTAGAGCTATGGGGAAGAGGCTTGCTATTTGACTCCTTCCTGGGAAGAGCTTATCTTCAAACAGGGGCCAGTGAACGAGGGCGGACCAGAGTGATTGAACTGCAAGGTGGTCAGTCTCGTGGCTGCATCTATGTAGAGACTTCCACCAGTCAGTGCCTGACAGACTTATGACTTTTCCATTGACTTATACAGTGGAACTGAGCTATTGCTAAAATCTGAAAACTGACTAGAAAAGCCAGCTTGGGACCAGacttctgcaagtttctccTTTATAGTCTGGTATTCTCATGCACTTGcctgcttctgattggtcagaaaccTGCTTTTGTTGAGTGGTATAGCAGGTACTGTAGAATGAATATGTGTGCATAGTGTCTTTTGTTGTGATTGTAGGAAGTGAATCTGTGTCAGCCTGGCCTTAGGCTAAGGGGAAAGTTTTAGCTATTACAACAGTGCTCACAAAATGTTGTTCATCCATGGTGCTTTTGAATATCTCATTAGTCCAAAGTAAGTAAAAGAGCATTTGCTATTATGTGTGTTAGGCTAGCAGTTAGTTAAGGTAATAGTTAAGGTTGCACAGTTATCTGCTGGTCAGATATTAAAAGCAAAACCTAAAATTCACATAAGGACACTGTTGATGTTGACAATGATGTTCATGTAATCAGGCCtctgaaaacatttcaaacatttttttaacaataaaaatagtag

Function

NR:

description
PREDICTED: calpain-5-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936098.2 True 3206 mRNA 0.48 14 16552388 16564137
XM_034303424.1 False 2928 mRNA 0.48 13 16552388 16563741

Neighbor

gene id symbol gene type direction distance location
LOC117596996 NA coding downstream 16502 16528806 ~ 16535886 (-)
zgc:103586 cda,zgc:103586,LOC108267558,LOC108434617,LOC105907191,LOC107597094,LOC107683547,LOC104927619 coding downstream 37540 16506973 ~ 16514848 (-)
LOC113540033 NA coding downstream 47839 16498973 ~ 16504549 (-)
si:dkey-19b23.10 LOC108268326 coding downstream 56918 16482264 ~ 16495470 (-)
si:dkey-19b23.7 si:dkey-19b23.7,LOC108434614,LOC107683551,LOC107597093 coding downstream 82257 16465402 ~ 16470131 (-)
phka1a phka1,phka1a,LOC108267555,LOC107707917,LOC107702224,LOC107711571 coding upstream 1927 16566064 ~ 16584533 (-)
otub1b otub1,LOC106608596 coding upstream 85048 16649185 ~ 16653787 (-)
fam113 LOC108268071,LOC108434623,LOC107741458 coding upstream 91803 16655940 ~ 16661187 (-)
adad2 LOC108267669 coding upstream 98992 16663129 ~ 16669417 (-)
rcor2 rcor2,LOC107588183,LOC107668449,LOC107749809 coding upstream 151068 16715205 ~ 16726855 (-)
G65508 NA non-coding downstream 100496 16451677 ~ 16451892 (-)
G65494 NA non-coding downstream 120870 16431136 ~ 16431518 (-)
G65493 NA non-coding downstream 123030 16429143 ~ 16429358 (-)
G65491 NA non-coding downstream 124981 16427201 ~ 16427407 (-)
G65472 LOC108267266,LOC107595290,LOC107702060,LOC107707052,LOC107738084,LOC108434590,LOC105907155 non-coding downstream 179241 16369532 ~ 16373147 (-)
G65700 NA non-coding upstream 41870 16606007 ~ 16606592 (-)
G65715 NA non-coding upstream 111123 16675260 ~ 16684591 (-)
LOC117597072 NA non-coding upstream 164554 16728691 ~ 16735897 (-)
G65718 NA non-coding upstream 172016 16736153 ~ 16737913 (-)
G65722 NA non-coding upstream 239058 16803195 ~ 16804254 (-)
tnfsf12 tnfsf12 other downstream 125764 16419164 ~ 16426624 (-)
acox3 acox3 other downstream 480696 16054528 ~ 16071692 (-)
smim20 NA other downstream 560403 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 648033 15879471 ~ 15904355 (-)
G64436 NA other downstream 2308707 14232809 ~ 14243681 (-)
leap2 LOC100304644 other upstream 28425 16592562 ~ 16594505 (-)
bmp15 LOC108267203 other upstream 39672 16603809 ~ 16605717 (-)
G66053 NA other upstream 836457 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 875340 17439477 ~ 17444188 (-)
G66281 NA other upstream 1029611 17593748 ~ 17634868 (-)

Expression


Co-expression Network