sox17 (LOC108267806)


Basic Information

Item Value
gene id sox17
gene name LOC108267806
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21376395 ~ 21379959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936104.2
CGTTATTCCGACTTTTTTCAGTGTCCCGGAGCGGGTCACTCGCATCTTCTTTCGCTCCAGAAGCGCAGAAGCGCAAGCACCTGCACCAGATCCAACTTTTCTGTCCACATTCGCGCGCGTCAAGTTTATCCGGCTCCATTACAGCttagctaaaaaaaagaagaagaagaagaagaagtcatTCTCGGCCCCGCGGTTATCGGAGGGTGCGGGTTATCGCGAGATGAGCAGTCCCGATGCGGGCTACGCCAGCGACGATCCGAGCCAGGCCCGCGGGACCAGCTCAGCCATGATGGCCGGCGCGGCTCAGTGCGCGTGGCCGGAGCCGCTCAGCCCGCGAGCGCATGCCAAAGCCAAGAGCGAAGCGTGCGCGGCGGCGCGCGGGAAAGGCGAAGCGCGCATCCGCCGGCCGATGAACGCTTTCATGGTGTGGGCCAAAGACGAGCGCAAGAGACTGGCACAGCAAAACCCCGACCTGCACAACGCCGAGCTCAGCAAAATGCTCGGTAAGTCATGGAAAGCCCTGTCCATGTTGGATAAGCGACCGTTTGTGGAGGAAGCGGAAAGACTGCGCGTGCAGCACATGCAGGATCATCCGAACTACAAGTACAGGCCTCGTCGTCGCAAACAGGTGAAGAGAATCAAGCGCCTGGACTCTGGCTTCTTGATGCCTGGGGCAAGTGAGCCCCAGGGTGCCCTCAGTATGGAGAACATTGAGGTGGGCTACTCCCTCCCCCCTGGGGGTTTGCCTCAGGCTGGTCTGTCTCAGTACTGCGATGCCCAGGGCTTGTTTGAGCACTACAGCCTTCCCACTCCTGACTCCTCCCCGATGGATGCGATGGGGACAGAGAGTGTGTACTTCACTGGCCATTCTCAGGAGGACAGCTCTCACATGGCTTACAGCTACCATCACCAACAAGAGTACGCACCTCTAGGGCACCAGCACCCCCTCGTTAGTACACAGGCTCAAGGCAGAGTACGaaatgacacacactcacatgccaCGACGCACTCacaggtccacacacacaccacctccaACTTACATTTAGTACACTCTCACAGCAACACACAAGCCAATCTAATGAGCAGCTCACACCCTCAGGAACTCGGTAATGCAAATAGCAGCATACATCATAATATTAGCCACAATATCAATCCTCACCATGCGCATTCATTATCTCAGGCCCTTTTTAACAGAAGCCTGTCACCTGGCTCCAATCAGGCCCCGCCCCCTGCATACCTGGGGTGCCCATCTACTCTAGGTGTTTTTTACAACCCTGCCTCTCAGGTGAAACGCCCGCTTGAGCAGCAGTCACCTCCACAAGAAGGgcacacgcattcacacactccttctgATCAACACTCCCATACACATACAGAGACGTGCCGGCATGCTCCTGAGATGCTAAATGAAATGGGTTGTGGTGAATTTGAGCAGTACCTGTCATATGGGCTTCCTCATGCAACCATGCAGGGGTCTGACCTCATCTCTACTGTACTGTCTGATGCTAGCACTGCTGTGTACTACTCTAACTATAACAACACCTGAAGCTCCTGTATCACAGCAAACACCCCTGAGCCACCAATAATGACTTCTGAATGACTTATCACACTGGTGCCACATCTTGCAGAGACATACAcgtttatatttgtatatatatttgtagaACATAATGAAGGGAGTTATGAACTTATAAATGTTTAGAATTGTATGAATTGTATAAATTCACTTAAACTTgcttaattaaacatttaaaaatgtttttaaaggagACACAGTAATGCTGAAAAACACTGTACATAAGTccttttataaaatgaaatgtcattaatgtattaaaatgtaatttcatac

Function

NR:

description
transcription factor Sox-17-alpha-A-like

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:0061371 determination of heart left/right asymmetry biological_process

KEGG:

id description
K04495 SOX17; transcription factor SOX17 (SOX group F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936104.2 True 1858 mRNA 0.51 2 21376395 21379959

Neighbor

gene id symbol gene type direction distance location
LOC113540120 LOC108267808 coding downstream 25584 21337108 ~ 21350811 (-)
LOC113540421 LOC108267573 coding downstream 127758 21235253 ~ 21248637 (-)
sdcbp sdcbp,LOC107660837,LOC107730132 coding downstream 142710 21227985 ~ 21233685 (-)
unm_hu7910 asph,unm_hu7910,LOC107730121,LOC107698672,LOC108436147 coding downstream 150411 21195948 ~ 21225984 (-)
nsmaf nsmaf coding downstream 187617 21168890 ~ 21188778 (-)
sox32 LOC108267240,LOC100698545 coding upstream 19596 21399555 ~ 21401268 (-)
mrpl15 mrpl15 coding upstream 33902 21413861 ~ 21417828 (-)
trnaa-ugc NA coding upstream 38209 21418168 ~ 21418239 (-)
LOC113540027 rgs20 coding upstream 47226 21427185 ~ 21430580 (-)
fastkd3 fastkd3 coding upstream 100656 21480615 ~ 21485813 (-)
G68466 plag1 non-coding downstream 55249 21320818 ~ 21321146 (-)
G68186 NA non-coding downstream 572291 20803417 ~ 20804104 (-)
G68108 NA non-coding downstream 740196 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 740602 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 744685 20630166 ~ 20631710 (-)
G68495 NA non-coding upstream 27152 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 91673 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 92860 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 94628 21474587 ~ 21475776 (-)
G68585 NA non-coding upstream 116973 21496932 ~ 21501433 (-)
LOC113539989 LOC108436138 other downstream 5385 21354619 ~ 21371010 (-)
G68462 NA other downstream 47145 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 62498 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 550875 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1410544 19962582 ~ 19965851 (-)
G68760 NA other upstream 554567 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1249656 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1912089 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1951057 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 2100006 23479965 ~ 23483850 (-)

Expression


Co-expression Network