kiss1ra (kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909)


Basic Information

Item Value
gene id kiss1ra
gene name kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24792295 ~ 24807404 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936109.2
CTACATATGCAATGCctatccccaaactgttgctaggAGACCCCTAGCTCTCTTTTCTCCAGCCCTGCTGATGCCCACGTGTATTCAGGCTCAGTATAAATCTGATGCAAACTTGCCTCACAGTGGATGCAGCTCAGAAAGCTCCGTTTTTCACAAAGAAGAGAAGAGCAGCCCATTCAGAAGTTCACAATTATTCAGATAAGCCATTTTGCCCACCGTGTTGCCATACATCCTAAGGGAAGAACCtagcaaaataaaaactttagGAGCCACCATGTTCTCCAGCGAGGTGTGGAACTCTTCAGAGATGCTGCTGAATGATTCTGCAAGGAACTTGTCATTGGAGGAGGTGGAAGAAGGCGAGCACCCTTTCCTGACAGATGCCTGGCTGGTGCCACTCTTCTTCTCGCTCATCATGCTAGTGGGACTCGTAGGGAACTCACTGGTCATCTATGTAATCTCAAAGCACAGGCAGATGAGGACCGCCACCAATTTCTACATCGCTAACCTGGCTGCCACAGACATCATCTTCCTGGTGTGTTGTGTGCCATTCACGGCTACCCTCTACCCTCTCCCTGGGTGGATCTTCGGTGACTTCATGTGCAAATTTGTTGCTTTTCTTCAGCAGGTGACAGTCCAGGCCACGTGCATCACATTGACAGCAATGAGTGGGGATCGTTGCTACGTGACTGTGTACCCCTTGAAATCACTACGTCATCGCACTCCACGAGTTGCCATGATTGTAAGCATCTGCATCTGGATTGGCTCTTTCATTCTGTCCACCCCAATTTTAATGTATCAAAGGCTTGAGGATGGCTACTGGTATGGGCCAAGACAGTACTGCATGGAACGCTTTCCCTCGAAGACACATGAAAGAGCCTTCATACTGTACCAGTTCATAGCTGTCTACCTGCTGCCTGTTCTAACCATCTCCTTCTGCTATTCCTTTATGTTGAAGAGGGTGGGCCAGCCAACCGTGGAGCCCGTTGATAATAACCATCAGGTGCATCTGCTCTCTGAGAGAACCATTTCCATCAGGAGTAAGGTTTCCAAAATGGTGGTAGTCATCGTAGTGCTCTTCACTATCTGCTGGGGTCCCATTCAGATCTTTGTCCTCTTTCAGTCTTTCTACCCCAACTTTAAGGTCAATTATGCCACATATAAGATCAAGACATGGGCCAACTGCATGTCATATGCCAACTCGTCTATCAATCCCATCGTGTATGGCTTCATGGGTGCCAGCTTCCGAAAGTCCTTCAGGAAGACTTTCCCCTTCTTCTTCAGACATGCAGTGAGGGACAGCAGTGTAACCTCTCGTACAGCCAATGCAGAAATCAAATTTGTTGCAAAAGATGAGAGCAATACGGAAAGGAAATGAGCAGCAGGCAGGCAAGAGAATTAGCACCTTCATCTGCACATAGACAAATGCCTAATTGCTGGCACATCCTGCACCAAAACAAACTGACTTTGGAAATTAAACGATTTGTTCAGGGAGCTTCGGTGTGCATAATAAAGAGATGGATGTACAATGACATGGAAAAGCACATTTGCATGTTAATTCCTGGATGCTTACTTAACCTTTAATAAGTATAACACATGACCAATATGAAATGAGAATgagatgaaatgagatttaataCTACATGTAAGTTCAGAGAAACAGTGGATGCTGGCCGTAAAATGAATGGGATGTAAATCAGAGAGGTCAAAGTCTTTGCCAGATGAATGGATGTTCTGCCAACAGCGATCTGCAGGAACCTGCCAGAGAGGATGTTAACTGAATGATCCATGGAGACTCATGACTCATTGATTGAGGTGGAGATATAGGTTGGTCCTGCACCTccctgtgaacacacacactgctgcctaGCAAACCCTGTACATTTTTATCTTAATGGGTGTTACTGATGTTCTCAGTTTACCTCCTGACTCAGCCGAGAGTGTTCTTACTTTGACAGCAAGTCTAAACACATTTCAGAACATACTGTATTGTTACCAGTTACAGCTTGGGTTGGCAATGCTTGTACCCTGTACAGTTAGTAAAGCTGTTCAATTGTTTTGCTGATGGACACACAGCCTAATCAGAGAAGGGTCAATGGTGTATAAATGTTCTTGTGAGATGAGCCTTCTGTGACCTTCTGGCTCAAGAAGAAATACTGtctttttttataacattgcGATTTTGCCAGATGCTTCTGATCAACTGAATAGATTTTCCATCACCATGATATAAAGAcagtaataaacataaaataatataagacTGACGTGTAACTTTATGAATATTGAATGGATGGgattattgtatgtatgtatgtatgtatgtatgtatgtatgtatagagccctccaaaattattggtacccttcataacaatgagcaaaaataaatatataaaaagaataacacatgcaatTAGTAATATTTTGAGCTCAATCATACAAGGgcatttaaacctttttttcccaaacCCCCCCAAAAGCAGCTTTTATTAAGTAGTGCATTCTTCTACAAAACattgcttttaaaatattatgcatgcttacaattaatatttctCTCCTGCCCTGAAGAGAACAGCACTGAGcctctttctgtcatttttttaaggTTGGAGACACTTTTATAGGGCTCTTGGTCTAATCCTCCATGCAAcattttaagctcctttatattccTGGATTTGTTCATATGGTCTCTGCTCTTCAATTCCAacaccacaggttttcaaaagGGTTCAAATCTGGAGACTGAGACAGTTAAATAACAGGCTGATgttgtgtttctttaaccatATCAGTGCTGATTTAGAAGTATGTTTTCATCATCTTGTTGAAAGCTCTATATATGGCCAGCTCTGCCAGcaggttttgggctgaaatatcctggtacttagCAAAGGTCATGGTGCCATTAATGTTCACAAGAGCCCCTAAAGCACCTGctacaaaacagccccaaagcatccCTGAACAACCCACATATTTTCCACTGAGCTATCAGGTGCTTTTCCTTGTATGCAGTCctgtttttttcaccaaacatgccAAAGATGCACGTGACCAGAAAGATTTCCAGCGCATCACACAATGCCATTTGTATTTCTAATGAAGCTTGCTGAAGTTCAGATGTTGCATTTCGTGATACTCTAACGTAGGGCTTCTTTATTGCAATGCTTTCCAACAGCTCGTTGTTATGAAAGTGGTGTTTAACAGTTGATTTTGAAACTTTCGAATTAAAATCAAACTGTGCAATTCTAAAGCTGTGATCTCTGGGGGTCTTTTTCCCTCCTTTCCCATCCTTTTCACCGTGTAGGGAAACGGTGCATGAGCACATATGTCTAATTTCCATGTGAAACTTTTTGTATGGCCCTAATTGTGCTGAATGCtatttttaactgcttatgggtttttttatgtcagtttgtgatttgtgcaggtcagcatccaatttgtttgcatttattttaaatgttcctTAGGGATGTCAATAAATTTGtgaaagaaaatataattattttaaaaaacagttctAATGTAATCATTtcgtatatgtatatgtatatgtacaagTGATATGTTGTCTTTCTTtataacaaaacaaagcagacCTTCTTAGCGTTAGCATCAGTGCAATGTATTTGTAAAaggatatatatacagtatgtacatctAAAAGCTCCCCTCTACtcattctttctccttttcaccTTGAAAGACTCATCTATAATTTATGTAGCACAGCTTTATCGTTGGACTTTGCAGTTTTAGATATGCCTCATGAATATATTCGATTTTATCAATctgaattctttctttt

Function

symbol description
kiss1ra Enables neuropeptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Located in cell surface and cytoplasm. Is expressed in brain; fat cell; head; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in central precocious puberty 1; hypogonadism; and hypogonadotropic hypogonadism 8 with or without anosmia. Orthologous to human KISS1R (KISS1 receptor).

NR:

description
G-protein coupled receptor 54-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function

KEGG:

id description
K08374 KISS1R; KISS1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936109.2 True 3819 mRNA 0.41 5 24792295 24807404

Neighbor

gene id symbol gene type direction distance location
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 195186 24587207 ~ 24597109 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 231017 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 313491 24476189 ~ 24478804 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 382998 24294636 ~ 24409297 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding upstream 608541 24178967 ~ 24183754 (+)
klhl20 klhl20,LOC106569069 coding downstream 187473 24994877 ~ 25013306 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 214209 25021613 ~ 25047317 (+)
astn1 astn1 coding downstream 462818 25270222 ~ 25552839 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 835998 25643402 ~ 25664410 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 1143750 25951154 ~ 25953899 (+)
G70204 NA non-coding upstream 42382 24681981 ~ 24749913 (+)
G70142 NA non-coding upstream 206388 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 207456 24584614 ~ 24584839 (+)
G70139 NA non-coding upstream 208919 24583176 ~ 24583376 (+)
G70138 NA non-coding upstream 217725 24574336 ~ 24574570 (+)
LOC113540553 NA non-coding downstream 31817 24839221 ~ 24849487 (+)
G70520 NA non-coding downstream 190512 24997916 ~ 24998225 (+)
LOC117597084 NA non-coding downstream 520814 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 749433 25556837 ~ 25557761 (+)
G70763 LOC107732307 non-coding downstream 751023 25558427 ~ 25561346 (+)
G69971 NA other upstream 682406 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 686072 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1471952 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2139848 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 3029994 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 51622 24859026 ~ 24871263 (+)
tnr tnr other downstream 900423 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1089613 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1408660 26216064 ~ 26224038 (+)
G71385 NA other downstream 1421360 26228764 ~ 26229191 (+)

Expression


Co-expression Network