ovol1a (LOC108267728,LOC108434587,LOC103038355)


Basic Information

Item Value
gene id ovol1a
gene name LOC108267728,LOC108434587,LOC103038355
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16291819 ~ 16298721 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936115.2
TGGGTCGGGTTTGTTGTCACCGTTATTTCCAGGCGCATGCGCGCTGCCACCTGTTTCCTCCTGAATGTGTACCTGCGCTTCAATCAACCTTTGAAATTCGTTGTGCTGTGACTCAAGTGAGCGGATCGAAATATTTCCTCCATCGTTGTGCGCTGGTAGAGCTATCAAACCGGCGCTCGGACGGCCAGCATACGCACATTTGGTTAAAGGAACCAGCTCTGAGCGTGGAAGTTACGGAAGAGAAGGCAGGGCGCGCAAAAGTGGACAAATGGTGGGAGACGCCACAGGAACCTGTAGCCTATAGGTACAAAAGTTTGTAGAGGCAGTGAGAAGGGAGGAGAACGAAACAAAACCGTCAGAGTCTCCATTAAAATCGGCTACTCACCGGACCTCGTCCTACAAGCAGATCATTTATTAGCTGTATCACCTGTGTGGGTAATTTCAGTAGCTTGTAGGTGAGTAGTGTATAAAGACTACAGCGCTGTAGTTAATACAATAGGGTgttgtagagagagagagagagagagagagagagagagagagagagatagcggAGAGCCACCTGGAGAACTCAGCATGCCACGAGCATTCCTGGTGAAAAAGCCCAGTGTTTCACCCGGCAAGAGGAGCTGGAGTGATCTACCTGACCATGAGCGAGGAGACATTTACATACCAGTCTCTGTGTCCCCTCCAGCTCTGTGGGAGGAGACAGAGGCAAGTACAGCTGAAGTGGCCCTGTGCCTGTCCACTCATAAAGAACACAACAGATGTACACAGAAATACATGCTAGAGCCCTACACTGTGGTTTCTACAGCTGAACTGCCCTCCTGCACCGCTCTGGGACAGCAGCCCAGTCCTGAAACAGAGTGCATCCGAAGTACACAGAGCAGCACATATGTCCGCTCCAAGATCAAGgTGACAACAGGTGAGCTCCCTGTTGAAGCTCCACGTAACATTCTGAGCACAAATGCTGATCCTCCTGTCACTGTGGCAAACCCATCTCCCACAACCAGCAGTGGGACATCTTCTGCACCTACAGCAGGGGCAACCTATGCATGTCAGGTGTGCCAGAAAGTGTTTCAGTACCAGCGCATGCTCAACAGACACCTAAAGTGTCACAGTGAACAGAAACGGCATTTGTGCAGTTTCTGTGGCAAGGGTTTTAATGACACCTTCGATCTCAAGAGGCATGTGCGCACACATACAGGTGTTCGTccatataaatgtaatttgtgTGAGAAAGCCTTTACCCAGCGCTGCTCTCTGGAATCCCACATGAAGAAGATCCATGGTGTGACGCAGCAGTATGCCTACAAGGAACGGCGCACCAAGCTCTATGTTTGCGAGGAATGTGGCCACACTGCTTCTACTCAGGATTCATTGTTGCGCCACATCCACAATCAACACCCAAACAGTGCCTTCTTGCGGGCCAAGGGGGCACGTAGACATTCAGGGGCAGCAGGTGTGGTTGGACGGGAGGAAAACTCCCTGCCTGGCTCTCCTTTATCTCTGAACAGTGATGACACAACAGGATCAGGAGGAAGGTAGAAAGAGCTGAGGTTGATTGagacataaaataatattgtCATAATATACACATCTCTCACATTATGTCAACTGGATCATATgcgattttatttaaaataagacaAGTGAGAAAGTAAAACTGGAACCCTAACGATACAGTGAAGTAAAATGAAATGGTACAATAAGCAAAGTGAAAGACTTTGACAGACTAGATGAACTGATGAATGAGTTTCAAGCAGTGATCGTAGATTAAGTTTGAGTTTACACATTCACTACAGATGAGGGCTGGTTCTTCGCTTTGAAATCACTAAACAGCTAAATAATGATTATGCACTAGTTGATTctgaaaaactttaaaaagaaaagactaTGTAAATAGTACTCCATTTTTGCTCAGGGGAGAAACaataaagaacttttttttttctaaatattgttatattagaaattgttatatatataatgtcctATTTTGTTGCAAGGAATTTCTGAAGAGGGAATGGTGTTCGGTCAGTAATTATTGATGTTTGTAATATATACTGTCAGATGTGTGAagaaatgtgtatttatcaagGTGGTGTGTAATATTCTTTTGGTGGAGTTTATCACTTTTTCcagattttatacatttataataacatataaatCTTTGTACATAATATGAACATAGATtcacattttcatattcattataGGCTATCCTCAAGGGTAAAAGATGAGATCTGTGCTCACTGCAGTTACTGTCTGACATCCTAACAGTAATAATGCTGATTTGTCTTCAGGCCTAATAGTTTAACTAGAGGAACTGAAATACTGTATGGAACTTTACCACATAACTTTTTAACGTGAATGTGctttctgtataaaataaacaataaactttttattttatggtaCAAATACTGAA

Function

NR:

description
PREDICTED: putative transcription factor Ovo-like 1

GO: NA

KEGG:

id description
K09216 OVOL; ovo

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936115.2 True 2434 mRNA 0.43 4 16291819 16298721

Neighbor

gene id symbol gene type direction distance location
LOC113539958 LOC108434586 coding upstream 7535 16278990 ~ 16284284 (+)
si:dkey-9k7.3 LOC108267726,LOC108434601,LOC103037388,LOC105895467 coding upstream 14325 16264254 ~ 16277494 (+)
tkfc tkfc coding upstream 27622 16256665 ~ 16264197 (+)
LOC117597006 LOC108267494 coding upstream 87617 16197701 ~ 16204202 (+)
LOC117597111 LOC108267494 coding upstream 139382 16145424 ~ 16152437 (+)
mus81 mus81 coding downstream 1220 16299941 ~ 16310157 (+)
fis1 fis1,LOC108434607 coding downstream 44623 16343344 ~ 16349401 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding downstream 54040 16352761 ~ 16355963 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding downstream 57520 16356241 ~ 16366191 (+)
chd3 chd3,LOC107738011 coding downstream 73276 16371997 ~ 16418930 (+)
G65335 znf638 non-coding upstream 60704 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 228358 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 236674 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 290358 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 421048 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 93408 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 131740 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 133224 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 215916 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 270966 16569687 ~ 16577737 (+)
LOC113540079 sh3tc1 other upstream 251835 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1632883 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2022479 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2572365 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 2729553 13558623 ~ 13562266 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 11492 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 69235 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 1036776 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1310771 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1701437 18000158 ~ 18010962 (+)

Expression


Co-expression Network