zgc:113531 (LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705)


Basic Information

Item Value
gene id zgc:113531
gene name LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24587207 ~ 24597109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936117.2
TATTGCTGGGGCGTCGTGCAGGAGCGCAGGAGTATCCCTCTATTCCTCTGTCACGTGTGAAATGAAACATAATCCGAGAGGCGTACAAGTCTGACTCCGGGTCGGTAAGAGGGCCAGCAAGAGCGCCAATGTGAAACCAGCCTACAATGTAATAGCTCGCTTTCTTTGTGTAACTTTGTGATAGCAAAGCACAAGCACCTAGTGCACCTAGTGCTGAGCAGATCAGTGGGCATGGCGGCGCTGAGGCAGCGGACTGCGTGGCTCGGAATCGGGGCGTTTCTGCTGTGCGTGCAGGGCGTCTGGGGCTTCTCAGTGGCAGGGCAGGACGGCACGTGTGAGGCTAACGGCTCGGTGTACTATGTGGGAGAGTGGTACTTCCTGGACTCGGAGCACTGCACGCAGTGTGAGTGCACGGCGGAGGGAGCGCTGTGCGCGCGGACAGAGTGCACCGCGCTGCCCGCCGCCTGCATCCACGTGAGCCACTACCCGAGCGACTGCTGCACGCGCTGCGAGAGGATCGGCTGCGAACACCGGGGAGAGGTGTACGAGCTCGGCCAAACCTTCCAGCCATCAGAATGTGAGCAGTGCACCTGCGACAACGACGGCATTGCCAGGTGCCTGGTAGCGGACTGTGCCCCCCCTGCATGTGTGAACCCGGTCTTTCAGAGAGGGAAGTGCTGCCCAGACTGCAAAGATGGTCCCAACTGCTATGTGGATGACTCTCGGACGCAGATAATCCCCGGAGGCGAGGCAGTGTGGGTGGATTCCTGCACCAAATGCCGATGCCATGACGGGCAGGATGCCGGCTATTGGGAGGGCAACCGAGTGGCCACATGTACCCGCCTCCGCAACTGCACAGTCAGCGAGGGGGAAAACTAAAACTCACACACTCTCCAGTAGCAGAAGGTGAAGCTCAGCAGGGCCTGCATATCAAGCTGAAGATGGCTTGTGCTCGCGTAGCTGATTGTAGCCTCTTGTAGCCTTTGTGATTACAAACAGTAGTCTTGTATAACGTGCCCAACATTgaggttaaatgttaaatgacaCGGCTGAATGTCGCTTTGGCCTTGTAAGCGATGTTCCCAAATTAAGCCCTAGTATGTAGACTGTAGTAAGGACCAAAAGTATGAGCAcacttccaaaaatatttaatcagcTATTCAAAACTAATACAAAATCCAAAACCAATAGCAATAGTGTTAGACATTGTTTAGTAACTATGAGACTCTATGAATTGGGTGCCATACGTGTGACAtcagtctttcttttcttcttgaaTGTTGTTTAGCCTTATTGCATAAGAAGTTAGATTTAGGTACAGATCTGTAAAAATACATCGTACAATGCACACATGCAATACACAGAGCTAGAACTGTTAATGGtttgtataataaaatgcaCTGTCCTGTATTTCCTCcaacatttctgtttaatttgccATCACATCAGTTGAAGTCTTCTGCTGTTAGTGGTTACATGTAAATACgttttcaaatatttacaggaaaaaaaaaaaaacatgacacgAAACAAAATCAGAGCAATATTCCAGAAACTGAAAATGATTCTGCAAACAATTCAAGCTATGCCTTTAAACTATGAGTCAATCGATGAACAAGTTTCTTCAGAGAATCCCAGATTTTGCATTGGAACCTACAATAGGTACAGTTGTTAAACAGAACTGATGTGTGATTATTTGCTCATATAACAATGCACATATTATACACTTAATGATTACATAATCATATACACATGTACATAATCATAAAGTTTAAGCATGTGTGCCTGAGGTTCCTGCAAacgaaataaaacaaacaaaaaaaagacactttgtGGTTAACACTTACTCCAGTTCCATGCAGGCATGGAAGTAGCTTTTTCAGAATTTTCAGAAattcactcctttttttttattaaacagtgtAAATCAACATTGTTTTGATTTGTCCTGTAAGACTGAGATATACTGAGGtacacaacaataaataaaccacTTTGAATAAA

Function

NR:

description
PREDICTED: von Willebrand factor C domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936117.2 True 2004 mRNA 0.46 3 24587207 24597109

Neighbor

gene id symbol gene type direction distance location
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 25929 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 108403 24476189 ~ 24478804 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding upstream 177910 24294636 ~ 24409297 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding upstream 403453 24178967 ~ 24183754 (+)
opn4.1 opn4m2 coding upstream 410453 24175258 ~ 24176754 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding downstream 195186 24792295 ~ 24807404 (+)
klhl20 klhl20,LOC106569069 coding downstream 397768 24994877 ~ 25013306 (+)
dars2 dars2,LOC107658301,LOC104960769,LOC104948518 coding downstream 424504 25021613 ~ 25047317 (+)
astn1 astn1 coding downstream 673113 25270222 ~ 25552839 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 1046293 25643402 ~ 25664410 (+)
G70142 NA non-coding upstream 1300 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 2368 24584614 ~ 24584839 (+)
G70139 NA non-coding upstream 3831 24583176 ~ 24583376 (+)
G70138 NA non-coding upstream 12637 24574336 ~ 24574570 (+)
G70134 NA non-coding upstream 16357 24570648 ~ 24570850 (+)
G70204 NA non-coding downstream 84872 24681981 ~ 24749913 (+)
LOC113540553 NA non-coding downstream 242112 24839221 ~ 24849487 (+)
G70520 NA non-coding downstream 400807 24997916 ~ 24998225 (+)
LOC117597084 NA non-coding downstream 731109 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 959728 25556837 ~ 25557761 (+)
G69971 NA other upstream 477318 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 480984 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1266864 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1934760 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2824906 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 261917 24859026 ~ 24871263 (+)
tnr tnr other downstream 1110718 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1299908 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1618955 26216064 ~ 26224038 (+)
G71385 NA other downstream 1631655 26228764 ~ 26229191 (+)

Expression


Co-expression Network