gba3 (LOC108267130,LOC108437095)



Basic Information


Item Value
gene id gba3
gene name LOC108267130,LOC108437095
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18426358 ~ 18430359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026936118.2
CGTAGGCTACGCACACGCTGTACGTGCTGACGCTCCACGCTGGATTTCCTGGTGCTGTAAAGACGGCGGCAATTAAAGTTGCGCTATAACAGTGAGTGACAGGTGAAAGAAAGGCTGTAGTTCGCCTGCTACTCACTGCTAAACGCACGCAAAATGGctcttaataaaaatatgtctGTCGAAGGTTTTCCAGCTGACTTTGCATGGGGAGCTGCAACAGCCGCTTACCAAATCGAAGGGGGCTGGGATATGGACGGTAAAGGCCCCAGCATATGGGACACTTTTTGCCACAGTAAAGGCCGAGTGTTTGAGGATCACACTGGAGATGTGGCCTGTAACAGCTACCAGCTTTGGAATGAGGACCTGAAGTGTATCCAGCAGTTAGGCCTCACACACTACCGTCTGTCCTTCTCCTGGTCACGGTTGCTTCCTGATGGAACCACACGTTTTGTCAACCCACAAGGTGTAGGATACTATAACAAAGTGATTGATGACCTAATCGCAAACGCTGTTATGCCCATGGTCACCCTGAACCACTTTGACTTGCCTCAGGCTCTGCAGGACCATGGTGGTTGGAAATCTCCAGAGATTGCAGATGTTTTTGACTCGTATGCTCAGTTTTGCTTTAAGACTTTTGGGGACAGGGTGAAGCTTTGGATTACACTGAATGAGCCGTATGTGTGCGCTAAACTTGGGTATGAGAATGGCCTTTTTGCCCCTGGCCTTAAAGAACCAGGGACCTCAGTCTACCTAGTTGGTCACAACATGCTGCGTGCCCATGCTAGAGCCTGGCATAGCTATAATGCCCACTTCAGATGCCTGCAGGGAGGAAAGGTGTCCATAGCTCTTAACAGTGACTGGGCTGAACCTTTAGACCCATGCTGTTTTGAAGATGTGGCTGCCACTCAGCGATACATGGACTTTAACCTAGGCTGGTTTGCTTGCCCAGTGTTTGGCACAGGGGACTACCCAGAGTCCATGAAGTCCAGGATTGAGGCCCAGAACCTTAAACTAGGATTTACTGAGGGGGAGCGTTTGCCCAAGTTTTCAGACGACGAGCCCAAGCCCTTAGGCACAGCAGATTTCTTTGCACTGAACTACTATACATCACGCAAAGTGAAGGACGCAAGCTCTCGTCCCAGTGATCTCAGTTTCACAGGGGACCAGGGAGCAGAGGCTATAATAGATCCATCATGGCCAGTGAGTGGTGTGTCCTGGCTTGCTGTCGTGCCTGAAGGACTGCGCAAGTTGCTAAAATACACAAAGGAGACTTACAACAACCCAGCCATTTACATCACTGAAAATGGCTTCTCACAGATAGGGCCTGTGGAATTCGAAGACATTGATCGCTGCCAGTTTTATCAGGATGTACTTCAGCAAGTATCAAAAGCTATCACAGATGatggtgtgaatgtgagagGATATTTTTCCTGGTCACTTCTGGATAACTTTGAGTGGTCAGATGGTTTCAGTGTGAGATTTGGCCTCTTCCATGTGGACTTCTCCAGCGCTGAGCTAAAGCGCACCATGTACCGCTCTGGTAGAGAGTATGCAGCTATAATAAAAAGATACCGCACCTATAACAAGCTGGACAGCTGAAGTCAGCACTCTGATATCTGTACTAGACACTAATTTGAATGTTTGAACACTTGAATAGCACCAAGAACAAACAAAGTAGTTgaaatttttatgattttattgaCTAATTTAGTAGTTTGTAAAATCCAGAAATATGCAAACTATAGAATATAGACCTGTAGCACTTTTTAATGCACTATGAGTAATGTATGTTTAGCTGAtccaaggattttttttttatacaaggTGTGATAATTTTGATTGCAGAGGAGCTTTTACAATAGCCTGTCacaaaaaattgtgtaaattgtgAATTTTGGAATCCATGAAGAATCTATACAGTACATatgcagtactgtgcaaaagtcttggtcaccctgttttgttttgtttttaagttcaaatgttgttatagatgtttatttagtgccTTCTGTAtaattgagtcagtacaaaaaacattttagatttccaaacattaattttccagTAAAAAGTTAAATGTTACAGTACAATGTTTGTCAGTAAACAAAGCGACATATTACGTACAAGACCACTTTTCGAATAAataacataatgaaggctgctgggttttgcatgcaaaaaaagaagtcaGAGTCTcaagaagaactgtggctggttctaaAAGATGCTCTGTAAAACTTAtaagctaatttccttataaaactgcactaattatACCtgagactattaatttaaaaaagcgAAGTTAACAGATGTTgcctttgtttagtttattactgtttactgctc

Function


NR:

description
cytosolic beta-glucosidase-like isoform X1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K05350 bglB; beta-glucosidase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026936118.2 True 2352 mRNA 0.43 5 18426358 18430359

Neighbor


gene id symbol gene type direction distance location
sec24d sec24d,LOC103036498,LOC107732696 coding upstream 182561 18221624 ~ 18243797 (+)
rap1gds1 rap1gds1,LOC107552992 coding upstream 343928 18049289 ~ 18082430 (+)
spata6l spata6l coding upstream 398307 18020211 ~ 18028051 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding upstream 407279 18015129 ~ 18019079 (+)
elp5 elp5 coding upstream 428142 17992640 ~ 17998216 (+)
sod3a NA coding downstream 418806 18849165 ~ 18851580 (+)
ppp1r15a NA coding downstream 520688 18951047 ~ 18954000 (+)
LOC113540597 col25a1,LOC102793499 coding downstream 740340 19170699 ~ 19327377 (+)
etnppl etnppl coding downstream 897672 19328031 ~ 19338707 (+)
trmt44 trmt44,LOC107710993 coding downstream 924021 19354380 ~ 19372755 (+)
G66637 NA non-coding upstream 44196 18381956 ~ 18382162 (+)
G66452 NA non-coding upstream 248716 18177234 ~ 18177642 (+)
G66426 NA non-coding upstream 314443 18111685 ~ 18111915 (+)
G66263 NA non-coding upstream 329775 18091588 ~ 18096583 (+)
G66237 NA non-coding upstream 434111 17990435 ~ 17992247 (+)
G66654 NA non-coding downstream 203 18430562 ~ 18431136 (+)
G66670 NA non-coding downstream 61013 18491372 ~ 18491581 (+)
G66754 NA non-coding downstream 238683 18669042 ~ 18669250 (+)
G66855 NA non-coding downstream 397820 18828179 ~ 18833827 (+)
G66865 NA non-coding downstream 428683 18859042 ~ 18863417 (+)
G66492 LOC108267609,LOC108437090 other upstream 217794 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 282727 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 415396 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 806279 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 1024970 17335497 ~ 17401388 (+)
G66864 NA other downstream 426097 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1560325 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 1717436 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 2589899 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 2883859 21314218 ~ 21323967 (+)

Expression



Co-expression Network