nagk (nagk,LOC107697250)


Basic Information

Item Value
gene id nagk
gene name nagk,LOC107697250
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14035207 ~ 14039607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936120.2
TTCGCGTTTACGGCAGGGCACGAGCGATAATCTGATTGGTGGAAAATAGACCTGCTTAACACGTCATCGTCTTGTCACGAGGAAGAAACAGGAAGCGGTAGAAATGAGTGCGGTGTATGGAGGTGTGGAAGGGGGCGGAACTCACTCCAAAGCAGTGCTGCTCTCCGCTGCAGGGGAGGTCCTCGCTGAGACAGATGGACCCTGCACCAATCACTGGTTGGTTGGTGTTGATAAGTGTATCGAGGGCATTAACGATATGGTCCAGAAGGCAAAGATCAGTGCCGGGCTGGATCCCAATACACCCATATATTCTCTGgGCATGTCGCTGAGTGGTGGAGAGCAGAAGGATGCCATTCAGAAACTGATTGATGAGATGATGGAAAAATTTCCTAAACTAAGCCAGAATTATTACATTACCACAGATGCCATTGgtgccatggcaacagcaaGTGGCCATGGTGGTATAGTACTGATATCAGGAACTGGTTCAAACTGTAAGCTGGTGAACCCTGATGGCACTCAGGTGGGCTGTGGAGGATGGGGTCACATGATGGGAGATGAAGGCTCTGCATTTTGGATCTCTCATCTTGCTGTAAAAGCAGTATTTGATGCCAGAGATAACCTGGTCACACCTCCACATGATATCACCTATGTTAAAAAAGCCATGGAGGACTATTTCAAGGTGTCAGATCTGATGGGCATGCTCCCCCACCTGTACAGAAACTTCCAGAAATCATATTTTGCTGGCTTCTGTAGAAAACTGGCTGAAGgtGCTAATGCAGGTGATGCCTTCTGCCGATACGTGTTTACCCAGGCTGGTAAAGTGCTAGCACAGCACATTGTAGCAGTGCTGCCCAACGTGCACCAGGAGCTGTTCTTGGGTGACCTTGGCCTGCCCATTCTGTGTGTTGGATCTGTATGGTTAAGCTGGGAGCTGATGAAAGATGGTTTCACTCAGGTCCTCTCCCAGGCCAAACTGTCTggttacagccattttcagaaCTATAGCCTTCTCACCCTACGCCAGTCGTCTGCTGTAGGTGGTGCCAAGCTGGGAGCCCAGAATGCAGGTGCCACCTTGCCCCTGGACTACTCCACTAGTGCCAGCGTGTTCTTCAGCCACTCGTTCACTGAGCAGTGATCAACACTAATGAGGACCAATCAAGCTGGAAACACTGCTCCctgtttttatacatatttgGCCCCAGTGCAGTATAGTACAATCAGAAAAATACCTCGACTTAAACTGGACATTGCTACGTAGTATTTCATGTGATCTGTACACCTCTGTATAATGTCATTCAGTTTACATGGCTCTTCGGCAGCAATCTGGGCATTAACCCAGTGAAAGGGAGAAGGTGAAGTTGCTGGGAGCGCGAGAGTTTATAGTTCTTTACATTAGAATTAGGgtcactaaatgcaaaaaaacttTAATTGCTTCCACATTTCCTATTTCCTattttgaatataaaaatgaatgctGTTCTGAGATGTATCTGTCCCCCGTGCACTAATTGTGAAATAACGTAAAatactaattttaatatttttatacagtatcTAAATGTCTTATCATAAAAATTGCAAGAGCAAGTGTATGAGGCCTAAGACCTGATTAAaaatcttgattaaaaaaagcatta

Function

symbol description
nagk Predicted to enable N-acetylglucosamine kinase activity. Orthologous to human NAGK (N-acetylglucosamine kinase).

NR:

description
PREDICTED: N-acetyl-D-glucosamine kinase isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00884 NAGK, nagK; N-acetylglucosamine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936120.2 True 1643 mRNA 0.46 10 14035207 14039607

Neighbor

gene id symbol gene type direction distance location
m1ap m1ap coding upstream 19082 13973996 ~ 14016125 (+)
LOC113539767 t185a,tmem185a coding upstream 136702 13891113 ~ 13898505 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding upstream 145623 13882312 ~ 13889584 (+)
col4a6 col4a6,LOC108267418 coding upstream 154533 13798180 ~ 13880674 (+)
LOC113540276 LOC108267420 coding upstream 296297 13724314 ~ 13738910 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding downstream 24887 14064494 ~ 14080036 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding downstream 52887 14092494 ~ 14151289 (+)
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding downstream 190366 14229973 ~ 14253890 (+)
LOC113540157 LOC108267639,LOC108428574,LOC101077706 coding downstream 316441 14356048 ~ 14379551 (+)
LOC113540153 nwd2,LOC107661962 coding downstream 536790 14576397 ~ 14622524 (+)
G64105 NA non-coding upstream 17538 14017286 ~ 14017669 (+)
G64103 NA non-coding upstream 21789 14013219 ~ 14013418 (+)
G64102 NA non-coding upstream 22892 14012098 ~ 14012315 (+)
G64049 NA non-coding upstream 125748 13903441 ~ 13909459 (+)
G64025 NA non-coding upstream 275456 13755544 ~ 13759751 (+)
G64095 NA non-coding downstream 2361 14041968 ~ 14042414 (+)
G64308 NA non-coding downstream 16920 14056527 ~ 14056887 (+)
G64459 NA non-coding downstream 255395 14295002 ~ 14295261 (+)
G64462 NA non-coding downstream 256663 14296270 ~ 14296472 (+)
G64668 NA non-coding downstream 640599 14680206 ~ 14680813 (+)
gc2 LOC108267421,LOC108412585 other upstream 315753 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 472941 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 560170 13468552 ~ 13475037 (+)
G63903 NA other upstream 616511 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 749373 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 216137 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 592423 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 1983587 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2270606 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2328349 16367956 ~ 16370957 (+)

Expression


Co-expression Network