zgc:101765 (LOC108267536,LOC108434636)


Basic Information

Item Value
gene id zgc:101765
gene name LOC108267536,LOC108434636
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16811400 ~ 16818534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936125.2
GATCGAGGTAAGACCAAACATGGCCGAACAGCAccggagaattttttttaactatttagaAGTTTTTGTCAACGTTCCGCTTAGAATTAGATCTGGGTCTTGTTCTGTGCTTAATAGTTCCCAATGACTGACCACAGGCCTTGTGTCCAGCTGAACACTGGAGCTCAGATGCCACTGTTGGGTTTGGGCACGTTCCGTTTGCGAGGCCCTGAGGAAACTTATCGGACAGTGGATGCTGCCTTAACAGCAGGCTACCGAGCCTTCGATACAGCAGCAGTGTACCGCAATGAGGCAGACATTGGCCAGGCCCTTTGCACCTTGTTGCCCAAACATGGGCTTTCCAGAGCTGATGTGTTCATAACGTCTAAACTAAGTCCCAGGGACCAGGGTTCCAAAGCCAGGGATGGCTGTCTGAGAAGCCTGGAGCAACTAGGCTTAGATTATATTGACCTGTTTCTGATTCACTGGCCTGGTACACAGGGGCTGGATGTAAAGGATAAGCGAAACCCTGACAATCGAGCTCAAAGTTGGGCAACCTTGGAGGAGTTCCATGCAGAGGGAAAGTTCCGTGCTATTGGAGTGTCGAACTACATGGTGAAGCACATGCAGGAGCTGCTGAAGAGCTGCAGAGTTGTTCCAGCCGTTCTCCAGGTGGAGTTCCACCCCAGGTTGGCTCAGAGGGAGCTAAGGGCATTATGTGAGGAAAGTGGAGTGTGTTTCCAAGCGTACTCCTCCCTGGGGACAGGCGTCCTCCTCTCTGATCCTCTGGTTCAGGAGATGGCAGGACGTTGTGGAAAAACTCCGGCTCAGGTGCTTCTGAGGTGGGCTGTGCAGCAAAACATACCGGTGTTGCCGAAATCATGCCAGCCCGACCGGGTGCAGGAGAACGGGTGCCTGTTTGACTTTGAgctcagtgacagtgacatgGCAAAGCTTTCTGCTCTGGACTGCAGGGAGAAGTTCTGCTGGAACCCGTCACTGGTACTCTAGACTACCTCCAGTGTCAAATCTAGAACATTATCAGTTTTGTCAGACTTCCAGATGCTGGTTTAGGTTTATTCAACTGGTTGTTGATTAATATATTACTTCATGAGTTTGTTATTGAAATTGAACATGATGGCGATGTCAGGGCTCTCATAGAACATCAGAaacatacagaaaaagaaatgttaacAATTCGTAGTTTTCTTTATATAACCATAAAGGAGATTCATGATTGAATGTAAATTAGGAAATTATAACTATAGATCTCTCTAAAAACTagacatatgtatgtatgtat
>XM_026936126.2
TACGTGACTCACCATGAAACTCTGGGCTTGTGGCACCTGGTGAAGACTCCTCTGAATCAGCATATACCTGAGAGACAAGAATTAGATCTGGGTCTTGTTCTGTGCTTAATAGTTCCCAATGACTGACCACAGGCCTTGTGTCCAGCTGAACACTGGAGCTCAGATGCCACTGTTGGGTTTGGGCACGTTCCGTTTGCGAGGCCCTGAGGAAACTTATCGGACAGTGGATGCTGCCTTAACAGCAGGCTACCGAGCCTTCGATACAGCAGCAGTGTACCGCAATGAGGCAGACATTGGCCAGGCCCTTTGCACCTTGTTGCCCAAACATGGGCTTTCCAGAGCTGATGTGTTCATAACGTCTAAACTAAGTCCCAGGGACCAGGGTTCCAAAGCCAGGGATGGCTGTCTGAGAAGCCTGGAGCAACTAGGCTTAGATTATATTGACCTGTTTCTGATTCACTGGCCTGGTACACAGGGGCTGGATGTAAAGGATAAGCGAAACCCTGACAATCGAGCTCAAAGTTGGGCAACCTTGGAGGAGTTCCATGCAGAGGGAAAGTTCCGTGCTATTGGAGTGTCGAACTACATGGTGAAGCACATGCAGGAGCTGCTGAAGAGCTGCAGAGTTGTTCCAGCCGTTCTCCAGGTGGAGTTCCACCCCAGGTTGGCTCAGAGGGAGCTAAGGGCATTATGTGAGGAAAGTGGAGTGTGTTTCCAAGCGTACTCCTCCCTGGGGACAGGCGTCCTCCTCTCTGATCCTCTGGTTCAGGAGATGGCAGGACGTTGTGGAAAAACTCCGGCTCAGGTGCTTCTGAGGTGGGCTGTGCAGCAAAACATACCGGTGTTGCCGAAATCATGCCAGCCCGACCGGGTGCAGGAGAACGGGTGCCTGTTTGACTTTGAgctcagtgacagtgacatgGCAAAGCTTTCTGCTCTGGACTGCAGGGAGAAGTTCTGCTGGAACCCGTCACTGGTACTCTAGACTACCTCCAGTGTCAAATCTAGAACATTATCAGTTTTGTCAGACTTCCAGATGCTGGTTTAGGTTTATTCAACTGGTTGTTGATTAATATATTACTTCATGAGTTTGTTATTGAAATTGAACATGATGGCGATGTCAGGGCTCTCATAGAACATCAGAaacatacagaaaaagaaatgttaacAATTCGTAGTTTTCTTTATATAACCATAAAGGAGATTCATGATTGAATGTAAATTAGGAAATTATAACTATAGATCTCTCTAAAAACTagacatatgtatgtatgtat
>XM_034303409.1
GTTCTGCTGTCGCTATGGTTACAAACGCCAGAGTCCCGCCCATATTATCACGTGATCGAGATTAGATCTGGGTCTTGTTCTGTGCTTAATAGTTCCCAATGACTGACCACAGGCCTTGTGTCCAGCTGAACACTGGAGCTCAGATGCCACTGTTGGGTTTGGGCACGTTCCGTTTGCGAGGCCCTGAGGAAACTTATCGGACAGTGGATGCTGCCTTAACAGCAGGCTACCGAGCCTTCGATACAGCAGCAGTGTACCGCAATGAGGCAGACATTGGCCAGGCCCTTTGCACCTTGTTGCCCAAACATGGGCTTTCCAGAGCTGATGTGTTCATAACGTCTAAACTAAGTCCCAGGGACCAGGGTTCCAAAGCCAGGGATGGCTGTCTGAGAAGCCTGGAGCAACTAGGCTTAGATTATATTGACCTGTTTCTGATTCACTGGCCTGGTACACAGGGGCTGGATGTAAAGGATAAGCGAAACCCTGACAATCGAGCTCAAAGTTGGGCAACCTTGGAGGAGTTCCATGCAGAGGGAAAGTTCCGTGCTATTGGAGTGTCGAACTACATGGTGAAGCACATGCAGGAGCTGCTGAAGAGCTGCAGAGTTGTTCCAGCCGTTCTCCAGGTGGAGTTCCACCCCAGGTTGGCTCAGAGGGAGCTAAGGGCATTATGTGAGGAAAGTGGAGTGTGTTTCCAAGCGTACTCCTCCCTGGGGACAGGCGTCCTCCTCTCTGATCCTCTGGTTCAGGAGATGGCAGGACGTTGTGGAAAAACTCCGGCTCAGGTGCTTCTGAGGTGGGCTGTGCAGCAAAACATACCGGTGTTGCCGAAATCATGCCAGCCCGACCGGGTGCAGGAGAACGGGTGCCTGTTTGACTTTGAgctcagtgacagtgacatgGCAAAGCTTTCTGCTCTGGACTGCAGGGAGAAGTTCTGCTGGAACCCGTCACTGGTACTCTAGACTACCTCCAGTGTCAAATCTAGAACATTATCAGTTTTGTCAGACTTCCAGATGCTGGTTTAGGTTTATTCAACTGGTTGTTGATTAATATATTACTTCATGAGTTTGTTATTGAAATTGAACATGATGGCGATGTCAGGGCTCTCATAGAACATCAGAaacatacagaaaaagaaatgttaacAATTCGTAGTTTTCTTTATATAACCATAAAGGAGATTCATGATTGAATGTAAATTAGGAAATTATAACTATAGATCTCTCTAAAAACTagacatatgtatgtatgtat

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K23257 yvgN; methylglyoxal/glyoxal reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936125.2 True 1282 mRNA 0.47 2 16815851 16818534
XM_026936126.2 False 1277 mRNA 0.48 2 16811400 16818534
XM_034303409.1 False 1257 mRNA 0.48 2 16815798 16818534

Neighbor

gene id symbol gene type direction distance location
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding upstream 7384 16776894 ~ 16804016 (+)
batf2 batf2 coding upstream 34571 16772399 ~ 16776829 (+)
sb:cb1058 LOC108267120 coding upstream 55993 16752137 ~ 16755407 (+)
b3gat3 b3gat3,LOC107750592,LOC107691906 coding upstream 61276 16746698 ~ 16750124 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding upstream 66043 16736067 ~ 16745357 (+)
exoc6b exoc6b coding downstream 6674 16825208 ~ 16920946 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding downstream 120927 16939461 ~ 16960809 (+)
LOC113539921 NA coding downstream 366487 17185021 ~ 17189452 (+)
si:ch73-211e3.1 mamld1 coding downstream 389969 17208503 ~ 17275182 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding downstream 460952 17279486 ~ 17307870 (+)
G65663 NA non-coding upstream 40557 16770605 ~ 16770843 (+)
LOC113540742 NA non-coding upstream 49525 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 49753 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 50062 16761266 ~ 16761338 (+)
LOC113540745 NA non-coding upstream 50293 16760981 ~ 16761107 (+)
G65938 NA non-coding downstream 538804 17357338 ~ 17372139 (+)
G65939 NA non-coding downstream 539952 17358486 ~ 17359569 (+)
G65927 NA non-coding downstream 584025 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 592460 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 612543 17431077 ~ 17440372 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 440443 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 492234 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 771416 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2152464 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2542060 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 516963 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 790958 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1181624 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1294899 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1378778 18197312 ~ 18208564 (+)

Expression


Co-expression Network