c4h4orf54 (LOC108268294)


Basic Information

Item Value
gene id c4h4orf54
gene name LOC108268294
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20289797 ~ 20297146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936145.2
GCCGTTTTCGCATTTCGTCACCGTCTCTATATTTGTAGAGATGCGTATTAAAGGCAGGTGGCAGCGCAGCAGAATGCGTAATGGAAGTGAAGCGCCAGGACAGCTTACATAAAGGTATTAAGTTAGTGTATGACATTATATCCAGCAAAATGTAAAGATTATTGGTCTGTACAGTTTAGAAGCCCCTCTGCTGGGCTCTGGAATGTCTGTTCTGCTCGTGTCACCATCTGAAATGAGAGTCTGGAGCGCCACGTACGCTGACAACTGTGGGGAAGAGAATCTACGCAGAGTGACAACTCCACTAGGACTGGACAACAGGGGCGAGCAGTAGGGCTTCCTGGGGAATAGTGTCTCTAATATTTACCCACCTAAAAGCAAAAATCTTCTAATCAACAAAGTCATTTACCACAAAGCCATGGCAGCATCAGAGAAGGCACTGATTTACGGAGGGGACACGCACTGCGCGCTGGCCAGCAAGGTTTTACGCGTCGTGGCGGCTCCAAAGGACTCGAATTATGTAGATCTGAACGAGTTGCTAAACCTGAAACTGGGCGAGACGAAAGCGGTGCAAGTAAGTTTTACCGGCCAGAGGGACACTCTCCAGCGCGTGCGGCTTCCTTCGGCGGAACATCTGCCCACGCGCAAATGTGTTAACCTGGAATGCTGGGAGAATGGCACAACAGAGGGAgcaacagaaacaaacacagctgGTTCATCTGAAAGACCACGGCTCAGTCATGGAAACCTCACGGACTGTCCCGTGCTGCTCGAAGAGCTCGACTCGGAGGGAACACCGGAAATTTTAGAAAAAGAGACCAAAGCACTCGGCGATGGTGATTTACGGCGCACGGATTTGTGTCTCAGCGAGAAAAGCGAGTCGGACGACGAAGTGAGTTTGGTGATCGCGGATTACTGCGTACACGAATTGGCCGATGATGAGGCTCACTACATCACCACGCGCGAAATTCAGCTTTCCGAGCTCGACCACGACGTGGACTGCGACTTCGAAACAGCATCCACTTGGGATATCGATGACGACCACCAGGTCTATTCGTTCGTGGACTACGCATCTGCCGACAGCGATGAACCCGCAGGAGTACAGGGGGAAGGCAACGAGGACGAGGCTCACAGGAGCACTGCAGTGAGCTGCAGTCAGGCAGAAAGTGATCCGGGCGACAGGACCAGGAGCGCCACCTCACACGAGAAAGCGCCCGAGTGCCAAGGCAAAAGCACCGGCCACattcacctgtcaatcaaagccACTTCCAGAGCTATAAACAAGCCTAGCAACGTCCAAGAAAAGGATGGAGGCcaccctcatcctcatcctcatgcCGTTCACACTGGAGACATGAGCCGCCGTGTTTTAAAGGACACAAAGGGGGAAAAGTGTTTGATAGCTCTGCCCGGGCGTTTGCACTTTGGCAGCAAATTCAAAGGCAAAGATGTTACAGAGTACTCCAGCGGCACATCCAGCGCTGTTAGTGAGTTAGATGATGCCGACAAGGAAGTGCGCAACCTCACGGCCAGAGCTTTCAGAAGTCTGGCCTACCCGTATCTCGATGCCATCAATTTCAGCACTTCCAGCGAGTCCTCGGCTTCAGAGCGCAGCAAAGGGCTGAACAGGTGGTCAGCGCTTGTTGATCTAAAGTATGGCAACGTGAACGTGTCCAAAGGAGGCGGTCACAATATAGTGGCCCATCAAAGTGCCTCGTCTAATTTTCAGTTGGCACAAAGGAGGGAGAGTAAAGGGATAACGGGATTAACACTGACCAGTAGAAGGGCGCCCCCAGTCGAGATATTTGCCCTGAACGGCAATCTGGTGAACCCCAAAAACGCATCGTCAACCAAAAAAATTGAGCTCATGGGCAAAATCGGACAGGGTCAGAGCGGGGTAATAAGGCTGACTGAGACGCTGAATTTTCGCTGCAACGTTAAAGCGGGTCCGCCTGCAAACGAAAGGCGCATGAAATCCGCCCGAACCGCTGGAGGATCACGTTCCGCAGATGAGGTTACAAACCCTCGGCAAAAGGCGCACAGCAAGCCACCGTGCCATTCAGAAGAAGCCATGGAGGACGTGCACAAGAAATCCATATTTGCTTCGAGCATactaaaaaatgtcatttcGAAGAAAATGCAGTTTGAGCAGGAGCGCAAGATGGAGCGGGGAGAGATCTGCGAGCCGGGCAGCCACGAGCACGAAGCGCACCGGGACAAAGCTGCGCGCACAGGACTTCACAGACAAAGCTCGAAACTCTCCGAGACAGGCTCCGACTTCAGTATCGTGTGCCTGGATGAGCTCGGAGACATCGTGGACAGCGGGTCCTGCGACGCCAAGGACAACGAGCGCCACGAAGAAACTCTTGCGCTCGCATCGGAAACCAATTTAGAGTCGCAAAACTGCGCGGCATTCGACGCTAAAAAAGGAGCTGCGGACGCGTCCAGAGGCGCACTGATTCGGAGCCAAAATAGCGCTTTCAGAAGCTGGAGGGACGAAGAGCTAGAGCTTCAAGCTGAGCGCGAAAACGAGCAAACGCCCGGAACGGACTCGACGAGCAGCAAGCTTACAAAAATGTCGCGCTTATTCGTGCCAAGCATCCAACTCGTGTCCGATGAGAGAGAGCTCGAGAAGCCTGAGCCGAGCGCGGATAGGAGCCGAGCAGAGAGGAGTATGAACACTCTGTCTGTATCAGACGCCGCTCAGAAACCTGCAGCGTCGAGGTCGCCGGAAATTAAAATAAGCTTACGGAGTCTGAGAGACAACCGGAGCGACGCGTTCAGCATCGCTAAGCTCCTCTCTCCCAGTACAGGCTGCAGTGCGGGCGGGCTGCTGAAAACAAACGAAGAGTCCAAATACCAAGCGCTCACTGCTGCACTGAAGGGCGACTCGTCAGACAGAATCCCACACTTCACCGTTAGAGACATTCGAGACAAGGCAAAGTTGCAAGCGCCAATACACCAGGTTAGAGACGTGCGCAAACTGGTTAAGAGCTCGTATCACTTTGTATCTTTGGACAGCAACAGCGCGGACATGGAGCACAAGACCTCCAAACTGAGCACGTTTCGGAATCCGACAACCCTTCCTCCTATTGTGATTAAGTGTCAGTCGGTGAATACAAATAGCAATGCGAAGCAATCTGAAAAATTCGCAGATTCCTCGAATCACAGACTGGCTGAAGATATCCAAGAGGCTGATGGGTCACATCCTCAGGTGTCTATAGATGGCATCAATACGGGCTCGGCGCAAGTAAGTAAACCAACTGACCGGGTGCATTTAGCCAACATAAAGcaggaggaaacccctgaattAAGAATTGAGACAAAATCCACCACAAAAAGGCAAGAGAAAGTGTGTGACCCAGGTGAGAAAAAGGCCGATCCCAAGATGGCCGCTCTGGAGAAACTTCAGGCTGCTGTTAAGACAATGGAACAGCTTTATGTGTTTGACAAAAATGAGTGGAAGAGGAAGTCCAAGCCCCAACCAATAACTGACAGCCATGTGCTTTCACTCCTGAGTAGTGAGCATCATGGAGGTAATGAGCAAGACCAGGGGAACGCTAGTTCTTCATCAGTCACCATGAGGCAAGACTCATTCTCAAGCCCAGATAAGATGGTAACTGCTGGACAGCAATCAACAcgaaaagaagagaaggaaacatttaaaacatcacGCACCCCTTCCATCCATGAAAAACGAAAGGACACCAAAACTCTGATGCACCTTGGTGGAAATTCTAATAAGAAAATTTCTAGCCAAAGCCACAGTCAGAAATCTTTAGTGCCTGTCACAACAAGTTCAGCAAAGGCCCCGCAGATGCATGTCTCGTCCTCAGCATCTATTAGTTCTATAGCTGTGAAGAACCCTAAGTCTCCAAAGTTACCAGTGTCTTTAAATATTACCAAGTCGAAGCCAATCACGGAGAAGAGTGAAAAGCTAAGCAGCAATACAGGCAAAGCCAATAAGGCTGGATTTGCCCCAGTTCAGTTCACGTCTTCAGTTGATTCAGAGAATTACATAACCATACCTGTGAAACCTTATGCTACTGATGCCCAACAATCTCACATGGtacacagcagcagcaccaaAAGCCACGGAGACATCCATCAGCCTCCCAAACACTCAAGTACTGTCATGGAGACACGCTCCCCAGATACCCCTACTGCTATGATCTACCATCACCCTCTGCCCATTACCATGCACGCAGCACAGCCACATGTAATTTGTTTCTCTCCTACAGTGCAGCCATCTCCAGTCCCTACAGACCACTTTCAGTCTACACAAAGAAAAATGCTCCTGGATCCCACTACTGGAAATTATTATTTGGTTGACACGCCTGTCCAACCAGCCACAAGACGACTTTATGACCCAGAAACAGGGCAGTATGTTGATGTCCCCATGCCACAACGTCCTCCCATGACCCCTGTACCTGTGCCTATCTCCCCTCTTGCCCTTAGCCCTGGAGGCTATGGTCATACCTACATGTTCTACCCAGGATACATGGCCTCCACAGTGATTCCTGCCCGGACCATTCAGTCTCAGCTTTCCATGCAGTCGGAGGTGGAAGCAGGAGACAAATCCCATGCAGGGCAGCAGGGAGATGGAGCCTACATGGAAAGCCCTTATTATATGCCTTCTGGGAAATCTCTGCAGTTAACTCCAGGTGCTCAGCATGTCACCACTGGCAGGGTGGCCAACAGCAAGGTGCCTGTTATCAGCATCACCTCCCAGCAAGGGCCCAGGATCATTGCACCTCCCTCCTTTGATGGCACCACCATGAGTTTTGTGGTAGAGCACAGATAACTATCTGGCCACTTGCAAtGAGCTGCCTAGAATACGTCCAGTCAGCACTTCCAAGATCTGATGTGtctattttcttttattgaCACATGTAATGTTTATCCACGCTTTCCTTCAACAGGAACAGCCTTACCATTATCATTCATCATTTGCTTTGTCATGTAATGTAATTCTtcattcttttcctcttctgtttGCAGTGCAACTATgcaatctctctttctttgtatAGCTCTTTTGCACCTTTGAGACATTGGttgaaaatgattttgaaaatgAGAGTGAGGGCTTAATGCTACAGCGTTTCAGGTtaaagca

Function

NR:

description
PREDICTED: uncharacterized protein LOC108268294

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936145.2 True 5116 mRNA 0.50 2 20289797 20297146

Neighbor

gene id symbol gene type direction distance location
mllt3 mllt3,LOC107683508 coding upstream 18566 20221888 ~ 20271231 (+)
hacd4 hacd4 coding upstream 123548 20159312 ~ 20166249 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding upstream 160333 20102481 ~ 20129464 (+)
trnar-ucu_2 NA coding upstream 188699 20101025 ~ 20101098 (+)
LOC113539830 NA coding upstream 190720 20091887 ~ 20099077 (+)
trmt10a trmt10a,LOC107683564,LOC106608639 coding downstream 9984 20307130 ~ 20314066 (+)
nectin4a LOC108267696 coding downstream 21291 20318437 ~ 20332200 (+)
coro1b LOC108267697,LOC108440123,LOC107679286,LOC107597893,LOC107710519,LOC107683505,LOC107558435 coding downstream 36532 20333678 ~ 20345681 (+)
si:ch211-119e14.1 NA coding downstream 52282 20349428 ~ 20351877 (+)
trnaa-cgc NA coding downstream 55268 20352414 ~ 20352485 (+)
G67827 NA non-coding upstream 14122 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 323909 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 372628 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 375394 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 401072 19888178 ~ 19888725 (+)
G67958 LOC108267586 non-coding downstream 183454 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 338202 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 395117 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 567732 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 891385 21188531 ~ 21189134 (+)
fcer1g LOC100305060 other upstream 135020 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 222577 19990684 ~ 20067220 (+)
G66864 NA other upstream 1431145 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2081233 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2146166 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 723112 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1017072 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1331930 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1455270 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2352664 22649810 ~ 22652447 (+)

Expression


Co-expression Network