Gene
RNA
| Item | Value |
|---|---|
| gene id | shha |
| gene name | shh |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 28476431 ~ 28491847 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| shh | Enables calcium ion binding activity; patched binding activity; and zinc ion binding activity. Involved in several processes, including hemopoiesis; positive regulation of sclerotome development; and positive regulation of smoothened signaling pathway. Acts upstream of or within epithelial-mesenchymal signaling involved in prostate gland development. Located in Golgi apparatus; endoplasmic reticulum; and extracellular space. Implicated in several diseases, including Hirschsprung's disease; holoprosencephaly (multiple); hypoplastic or aplastic tibia with polydactyly; middle cerebral artery infarction; and polydactyly. Biomarker of autism spectrum disorder; biliary atresia; glomerulonephritis (multiple); multiple sclerosis (multiple); and temporal lobe epilepsy. |
| description |
|---|
| sonic hedgehog protein A-like |
| id | name | namespace |
|---|---|---|
| GO:0042694 | muscle cell fate specification | biological_process |
| GO:0032835 | glomerulus development | biological_process |
| GO:0030947 | regulation of vascular endothelial growth factor receptor signaling pathway | biological_process |
| GO:0048741 | skeletal muscle fiber development | biological_process |
| GO:0007224 | smoothened signaling pathway | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0045494 | photoreceptor cell maintenance | biological_process |
| GO:0048795 | swim bladder morphogenesis | biological_process |
| GO:0042462 | eye photoreceptor cell development | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:2000223 | regulation of BMP signaling pathway involved in heart jogging | biological_process |
| GO:0007267 | cell-cell signaling | biological_process |
| GO:0042476 | odontogenesis | biological_process |
| GO:0048557 | embryonic digestive tract morphogenesis | biological_process |
| GO:0060956 | endocardial cell differentiation | biological_process |
| GO:0048839 | inner ear development | biological_process |
| GO:0016539 | intein-mediated protein splicing | biological_process |
| GO:0001839 | neural plate morphogenesis | biological_process |
| GO:0031076 | embryonic camera-type eye development | biological_process |
| GO:0048618 | post-embryonic foregut morphogenesis | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0061035 | regulation of cartilage development | biological_process |
| GO:0008015 | blood circulation | biological_process |
| GO:0035143 | caudal fin morphogenesis | biological_process |
| GO:0048663 | neuron fate commitment | biological_process |
| GO:0010001 | glial cell differentiation | biological_process |
| GO:0010002 | cardioblast differentiation | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0007411 | axon guidance | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0030902 | hindbrain development | biological_process |
| GO:0048702 | embryonic neurocranium morphogenesis | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| K11988 | SHH; sonic hedgehog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026936156.2 | True | 2578 | mRNA | 0.47 | 3 | 28476431 | 28491847 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ro60 | trove2 | coding | downstream | 189773 | 28276696 ~ 28286658 (-) |
| cdc73 | cdc73 | coding | downstream | 201116 | 28238896 ~ 28275315 (-) |
| LOC113540124 | NA | coding | downstream | 280374 | 28173321 ~ 28196057 (-) |
| LOC113540126 | NA | coding | downstream | 305450 | 28157829 ~ 28170981 (-) |
| LOC113540134 | LOC108267236 | coding | downstream | 335524 | 28124082 ~ 28140907 (-) |
| lmbr1 | lmbr1 | coding | upstream | 83061 | 28574908 ~ 28605243 (-) |
| LOC113540234 | csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 | coding | upstream | 119344 | 28611191 ~ 28619112 (-) |
| LOC113540232 | LOC108267757,LOC108430781,LOC107591375,LOC107668940 | coding | upstream | 127969 | 28619816 ~ 28628143 (-) |
| dcaf8 | dcaf8 | coding | upstream | 140907 | 28632754 ~ 28642395 (-) |
| scp2a | scp2,scp2a | coding | upstream | 177132 | 28668979 ~ 28680704 (-) |
| G72726 | NA | non-coding | downstream | 4660 | 28397661 ~ 28471771 (-) |
| G72709 | NA | non-coding | downstream | 92971 | 28343134 ~ 28383460 (-) |
| G72720 | NA | non-coding | downstream | 97299 | 28365657 ~ 28379132 (-) |
| G72658 | pfn2,pfn2l | non-coding | downstream | 331565 | 28081544 ~ 28144866 (-) |
| G72665 | NA | non-coding | downstream | 335993 | 28138866 ~ 28140438 (-) |
| G72796 | NA | non-coding | upstream | 175476 | 28667323 ~ 28668643 (-) |
| LOC117597077 | NA | non-coding | upstream | 221187 | 28713034 ~ 28717955 (-) |
| G72824 | otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 | non-coding | upstream | 291076 | 28782923 ~ 28784140 (-) |
| G72893 | NA | non-coding | upstream | 340537 | 28832384 ~ 28833720 (-) |
| LOC117597038 | NA | non-coding | upstream | 400169 | 28892016 ~ 28896799 (-) |
| trnas-uga_2 | NA | other | downstream | 239626 | 28236724 ~ 28236805 (-) |
| trnas-uga_1 | NA | other | downstream | 240164 | 28236186 ~ 28236267 (-) |
| LOC117597043 | NA | other | downstream | 250828 | 28197991 ~ 28225603 (-) |
| prkag2b | LOC108267467,LOC108430764,LOC108434244 | other | downstream | 434646 | 28016064 ~ 28041785 (-) |
| pcyt1aa | pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 | other | downstream | 920444 | 27547752 ~ 27555987 (-) |
| LOC113540437 | fam159a | other | upstream | 156477 | 28648324 ~ 28652425 (-) |
| LOC117597168 | NA | other | upstream | 295767 | 28787614 ~ 28791829 (-) |
| LOC117597037 | dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 | other | upstream | 381731 | 28873578 ~ 28884965 (-) |
| usp33 | usp33,LOC106569751,LOC107708728,LOC107751869 | other | upstream | 656791 | 29148638 ~ 29171921 (-) |
| LOC113540665 | LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 | other | upstream | 1072374 | 29564221 ~ 29575727 (-) |
