zpax4 (LOC108268120)


Basic Information

Item Value
gene id zpax4
gene name LOC108268120
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16470260 ~ 16490483 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936157.2
CCTACAACGCATCCTTCACATGTTCAAAACCAAGTGACACTGCAAGTTCGGCAAATTGCCAGAAGGTTAAGAGTAATACCTGAGATAAACAGCATGTGTTTATTAACACCCTTTAATATGCTTCTGAGACTGTTGCTCATAGGCCTACCTCTTACCAGCTGCTCCATTCCTGTAGTACCTGCAGGGACCTTCACAACCAATTGTCATGAACGCCACTTCTGGTTGTCTGTCAAGGGCAGCTTTCTGGGGAGCATGGTGCAATTTTACATTGAAGACAGCACTGGTGTCCACTTCCTGTCCAGTCAGAGGGCTGCAGAATGTGGCTACACTGTGGTCTTGAATCACCGTGGAAACCTTGTGTTCCGTGCCTCCTACCTTGCCTGCTATGTAGAGAATAGGGGAGACACTGAGTTTAGAGTTAGTGTACGGTTTGTCAACATGCAGACTGATGGCAGTGTTAATGCTTACCCTTTCATGCTTCATTGCTCTCTGGTTGGACCCTGGAGCCTGAGAGAGATTGTCTGTGAGGAAAATTACATGGAGGTTTCCGTTAAATGGCCAATCCCGATTGTTTCCCGTGAAGGAGTGAAATGGCTTGAACTGCAGTCTCAGACATTGGAAGAGAGAGTTAAGCAGCTCAGAACAGGGCAAGTGATCTTCTACAGACCAGGTGACTTTGACAAGACACCCCGACAGATCGAGGATGTCAAAGCTATAGGGTACCACATCACTGCCACTGATACTCGGATTCTTCTGCGCAGTGCCTACTCTTCTCTTCTGTCCTATACCATTAAGGAAAAGAACGTTCAAGTGGAGGCAGTTAGTGCCATCATAATTTTACAGCTTGAAGGGACATCACCCATCCCTGTTGAGATTTCAGTGGCCTGCGCAAAGACTAAGGCTGTAGTTGATGGCCTGTACCTTCTCTGGTCATTCCCTCTGGCCCTTTCTCCTCTGGTGCGAGGTTGGTTCAGAACTGGTGCGATGAGGTTGGGAGTGGACGGCAGAGTGCTGAGTGACTGTGAGATGCGCGACAGGGGTTATAATGTGTCACTGAAAGACCAGACAGTAAATATTAGGATTCCATTTGACAAAGAGGGAGCAAAAATAAAGAGTCATGTCCTTAAGGGCCAGTATGCTCAATCTCTGTCATTGGAGTTCTTTTATATGTATCACTGGGATGACGCGATTTGGCTTCATACTCAACACCGTAGCTTCCTACTCCTGCGCACACCGTATATGCTTAGAACACCAATTGTTCTCAACAACACAGATCCCTTAACAGAGATGTTCTCTGTCACCCTGGGTGTATTTCCTGCTGATGTGTCACTTCAAAATATTACACTTGGGCGTGACACTATGACATGGACAGAGGCAAAACAACACAATATTCATTTGAAACAGATACTCTTCAGCAATGGCAGCCATGCCTATGAACTTCAAGTCCCCTTCTCCCACCCCATGGTCACCCAGAGGGTAATTAGTGGACATTTCAGGAGGCAAAGCTTGgccctgacctttgaccttgtcATCTTCCCTGAAGAAGAGCACTTCAGCTATAGAACTAATGTAATGTTTGATCAAAAAGAACCAGCTCTTTCGGCTGTGCTGGCGGGCAGTTGTACAGAGAGAGGAGTTATGGTGGTTCTGCACTAcggctcagaggatgtgcaatGGGAGCTGTATGTGGGGGACCGTAGGCTGGACTGGGAGCTCGTGCAGCTGGGAGGCTACAGGCTGGATGGCGGAGATGACCATTTCAGCGTAGAGATACCTCTCTACAGCCCTGGAATAGCTTATGAGGACCTGAATTTGAAAAGCATGATTGTTAAGGTGGAGGTCAGTGCTGTTAACATGGTGACACTGAAGGCAGAGCACTCCCTTGTCCAGCGCTGCACATTTCCTGTTCGAGATTTTCTGGTTTGCCTGCCAGAAGGAAGGATACTGGTGGTTACAGACACAACTCGCTCCATCCCTCCCACCAAGCCTAACAGCACCACTCTCCTGGACACATCCTGTAAACCCACTGCCACAGACAGCTCCAGAGCTCTGTTCAACTTCAGCTTGGACTCCTGCGGCACCACCATGACTGTGGAAGGCAACTATCTGCTCTATGAGAATGAGATAAGATACAGCCAGAAATTTCTTCCTAAAGAAGACCCCCTCATCCACATGGACTCACCATTCAGGCTGACATTACAGTGTCGGTACCCACTTAACGTCACCAGCGCACTCACGCTTCATCCCACTGCTAACACAACCATCAAACATCCTTCATTACCACAAGAACTGAGACAAGGGCTGAACTGGACAAAGCCTCTAAGCAGAGgTCTAAGAATAACAAAAGGCTTGAAAGGTAGGACCACCCAAAGCTATCTTATGCATATGATGGCAAAATTACTTCCATAAGTAGTCCACCTTTAAATGcaaacattaacttttttttcttaaaaagtttaaaaattattaaaaataaaaaa
>XM_026936158.2
CCTACAACGCATCCTTCACATGTTCAAAACCAAGTGACACTGCAAGTTCGGCAAATTGCCAGAAGGTTAAGAGTAATACCTGAGATAAACAGCATGTGTTTATTAACACCCTTTAATATGCTTCTGAGACTGTTGCTCATAGGCCTACCTCTTACCAGCTGCTCCATTCCTGTAGTACCTGCAGGGACCTTCACAACCAATTGTCATGAACGCCACTTCTGGTTGTCTGTCAAGGGCAGCTTTCTGGGGAGCATGGTGCAATTTTACATTGAAGACAGCACTGGTGTCCACTTCCTGTCCAGTCAGAGGGCTGCAGAATGTGGCTACACTGTGGTCTTGAATCACCGTGGAAACCTTGTGTTCCGTGCCTCCTACCTTGCCTGCTATGTAGAGAATAGGGGAGACACTGAGTTTAGAGTTAGTGTACGGTTTGTCAACATGCAGACTGATGGCAGTGTTAATGCTTACCCTTTCATGCTTCATTGCTCTCTGGTTGGACCCTGGAGCCTGAGAGAGATTGTCTGTGAGGAAAATTACATGGAGGTTTCCGTTAAATGGCCAATCCCGATTGTTTCCCGTGAAGGAGTGAAATGGCTTGAACTGCAGTCTCAGACATTGGAAGAGAGAGTTAAGCAGCTCAGAACAGGGCAAGTGATCTTCTACAGACCAGGTGACTTTGACAAGACACCCCGACAGATCGAGGATGTCAAAGCTATAGGGTACCACATCACTGCCACTGATACTCGGATTCTTCTGCGCAGTGCCTACTCTTCTCTTCTGTCCTATACCATTAAGGAAAAGAACGTTCAAGTGGAGGCAGTTAGTGCCATCATAATTTTACAGCTTGAAGGGACATCACCCATCCCTGTTGAGATTTCAGTGGCCTGCGCAAAGACTAAGGCTGTAGTTGATGGCCTGTACCTTCTCTGGTCATTCCCTCTGGCCCTTTCTCCTCTGGTGCGAGGTTGGTTCAGAACTGGTGCGATGAGGTTGGGAGTGGACGGCAGAGTGCTGAGTGACTGTGAGATGCGCGACAGGGGTTATAATGTGTCACTGAAAGACCAGACAGTAAATATTAGGATTCCATTTGACAAAGAGGGAGCAAAAATAAAGAGTCATGTCCTTAAGGGCCAGTATGCTCAATCTCTGTCATTGGAGTTCTTTTATATGTATCACTGGGATGACGCGATTTGGCTTCATACTCAACACCGTAGCTTCCTACTCCTGCGCACACCGTATATGCTTAGAACACCAATTGTTCTCAACAACACAGATCCCTTAACAGAGATGTTCTCTGTCACCCTGGGTGTATTTCCTGCTGATGTGTCACTTCAAAATATTACACTTGGGCGTGACACTATGACATGGACAGAGGCAAAACAACACAATATTCATTTGAAACAGATACTCTTCAGCAATGGCAGCCATGCCTATGAACTTCAAGTCCCCTTCTCCCACCCCATGGTCACCCAGAGGGTAATTAGTGGACATTTCAGGAGGCAAAGCTTGgccctgacctttgaccttgtcATCTTCCCTGAAGAAGAGCACTTCAGCTATAGAACTAATGTAATGTTTGATCAAAAAGAACCAGCTCTTTCGGCTGTGCTGGCGGGCAGTTGTACAGAGAGAGGAGTTATGGTGGTTCTGCACTAcggctcagaggatgtgcaatGGGAGCTGTATGTGGGGGACCGTAGGCTGGACTGGGAGCTCGTGCAGCTGGGAGGCTACAGGCTGGATGGCGGAGATGACCATTTCAGCGTAGAGATACCTCTCTACAGCCCTGGAATAGCTTATGAGGACCTGAATTTGAAAAGCATGATTGTTAAGGTGGAGGTCAGTGCTGTTAACATGGTGACACTGAAGGCAGAGCACTCCCTTGTCCAGCGCTGCACATTTCCTGTTCGAGATTTTCTGGTTTGCCTGCCAGAAGGAAGGATACTGGTGGTTACAGACACAACTCGCTCCATCCCTCCCACCAAGCCTAACAGCACCACTCTCCTGGACACATCCTGTAAACCCACTGCCACAGACAGCTCCAGAGCTCTGTTCAACTTCAGCTTGGACTCCTGCGGCACCACCATGACTGTGGAAGGCAACTATCTGCTCTATGAGAATGAGATAAGATACAGCCAGAAATTTCTTCCTAAAGAAGACCCCCTCATCCACATGGACTCACCATTCAGGCTGACATTACAGTGTCGGTACCCACTTAACGTCACCAGCGCACTCACGCTTCATCCCACTGCTAACACAACCATCAAACATCCTTCATTACCACAAGAACTGAGACAAGGGCTGAACTGGACAAAGCCTCTAAGCAGAGgTCTAAGAATAACAAAAGGCTTGAAAGGCCTGTGAAATAATCCTTTAGCTGCTTCATATGGTATGAAGGCGTGCAGTTCATTGTCCAGGGTAATGCAgcaaggagttaaaaaaaacaaatgcattccTCCGA
>XM_034304130.1
CCTACAACGCATCCTTCACATGTTCAAAACCAAGTGACACTGCAAGTTCGGCAAATTGCCAGAAGGTTAAGAGTAATACCTGAGATAAACAGCATGTGTTTATTAACACCCTTTAATATGCTTCTGAGACTGTTGCTCATAGGCCTACCTCTTACCAGCTGCTCCATTCCTGTAGTACCTGCAGGGACCTTCACAACCAATTGTCATGAACGCCACTTCTGGTTGTCTGTCAAGGGCAGCTTTCTGGGGAGCATGGTGCAATTTTACATTGAAGACAGCACTGGTGTCCACTTCCTGTCCAGTCAGAGGGCTGCAGAATGTGGCTACACTGTGGTCTTGAATCACCGTGGAAACCTTGTGTTCCGTGCCTCCTACCTTGCCTGCTATGTAGAGAATAGGGGAGACACTGAGTTTAGAGTTAGTGTACGGTTTGTCAACATGCAGACTGATGGCAGTGTTAATGCTTACCCTTTCATGCTTCATTGCTCTCTGGTTGGACCCTGGAGCCTGAGAGAGATTGTCTGTGAGGAAAATTACATGGAGGTTTCCGTTAAATGGCCAATCCCGATTGTTTCCCGTGAAGGAGTGAAATGGCTTGAACTGCAGTCTCAGACATTGGAAGAGAGAGTTAAGCAGCTCAGAACAGGGCAAGTGATCTTCTACAGACCAGGTGACTTTGACAAGACACCCCGACAGATCGAGGATGTCAAAGCTATAGGGTACCACATCACTGCCACTGATACTCGGATTCTTCTGCGCAGTGCCTACTCTTCTCTTCTGTCCTATACCATTAAGGAAAAGAACGTTCAAGTGGAGGCAGTTAGTGCCATCATAATTTTACAGCTTGAAGGGACATCACCCATCCCTGTTGAGATTTCAGTGGCCTGCGCAAAGACTAAGGCTGTAGTTGATGGCCTGTACCTTCTCTGGTCATTCCCTCTGGCCCTTTCTCCTCTGGTGCGAGGTTGGTTCAGAACTGGTGCGATGAGGTTGGGAGTGGACGGCAGAGTGCTGAGTGACTGTGAGATGCGCGACAGGGGTTATAATGTGTCACTGAAAGACCAGACAGTAAATATTAGGATTCCATTTGACAAAGAGGGAGCAAAAATAAAGAGTCATGTCCTTAAGGGCCAGTATGCTCAATCTCTGTCATTGGAGTTCTTTTATATGTATCACTGGGATGACGCGATTTGGCTTCATACTCAACACCGTAGCTTCCTACTCCTGCGCACACCGTATATGCTTAGAACACCAATTGTTCTCAACAACACAGATCCCTTAACAGAGATGTTCTCTGTCACCCTGGGTGTATTTCCTGCTGATGTGTCACTTCAAAATATTACACTTGGGCGTGACACTATGACATGGACAGAGGCAAAACAACACAATATTCATTTGAAACAGATACTCTTCAGCAATGGCAGCCATGCCTATGAACTTCAAGTCCCCTTCTCCCACCCCATGGTCACCCAGAGGGTAATTAGTGGACATTTCAGGAGGCAAAGCTTGgccctgacctttgaccttgtcATCTTCCCTGAAGAAGAGCACTTCAGCTATAGAACTAATGTAATGTTTGATCAAAAAGAACCAGCTCTTTCGGCTGTGCTGGCGGGCAGTTGTACAGAGAGAGGAGTTATGGTGGTTCTGCACTAcggctcagaggatgtgcaatGGGAGCTGTATGTGGGGGACCGTAGGCTGGACTGGGAGCTCGTGCAGCTGGGAGGCTACAGGCTGGATGGCGGAGATGACCATTTCAGCGTAGAGATACCTCTCTACAGCCCTGGAATAGCTTATGAGGACCTGAATTTGAAAAGCATGATTGTTAAGGTGGAGGTCAGTGCTGTTAACATGGTGACACTGAAGGCAGAGCACTCCCTTGTCCAGCGCTGCACATTTCCTGTTCGAGATTTTCTGGTTTGCCTGCCAGAAGGAAGGATACTGGTGGTTACAGACACAACTCGCTCCATCCCTCCCACCAAGCCTAACAGCACCACTCTCCTGGACACATCCTGTAAACCCACTGCCACAGACAGCTCCAGAGCTCTGTTCAACTTCAGCTTGGACTCCTGCGGCACCACCATGACTGTGGAAGGCAACTATCTGCTCTATGAGAATGAGATAAGATACAGCCAGAAATTTCTTCCTAAAGAAGACCCCCTCATCCACATGGACTCACCATTCAGGCTGACATTACAGTGTCGGTACCCACTTAACGTCACCAGCGCACTCACGCTTCATCCCACTGCTAACACAACCATCAAACATCCTTCATTACCACAAGAACTGAGACAAGGGCTGAACTGGACAAAGCCTCTAAGCAGAGgTCTAAGAATAACAAAAGGCTTGAAAGACAGTTGGTCTATGGTCTATGATGGCTGGACATGGACACTTCGCAGAGATACAGTTTCTGCAACAGCTAgtggaaaatattgccaaattgTGATATTGGCAAGGTAGGATATGCcacaacatatttaaaaagttcaccattaatgtaatattatactGCCTGTCGGTTTATTCAAATGCAAATTAAGTTTGCAGGCATTAGTTGTTTTACATTGCTATGGCTCATTACTGAAATGGCATTAAAGTCCTTGCACTAGAGCACAAGCAGAACAGcgtaaaatacaaaaacaagagATGGATAAATTGAGTAACCACTTTACTGTAAAGCATAATccttttgattttgtttatttatctacagttaaaatataattaacatGAAGTAAATATATAGCAGTGAAATCCCCTGTCCTGCG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108268120 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936157.2 False 2480 mRNA 0.47 18 16470260 16477711
XM_026936158.2 False 2461 mRNA 0.48 19 16470260 16477852
XM_034304130.1 True 2771 mRNA 0.46 19 16470260 16490483

Neighbor

gene id symbol gene type direction distance location
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding upstream 5032 16460591 ~ 16465228 (+)
chd3 chd3,LOC107738011 coding upstream 51330 16371997 ~ 16418930 (+)
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding upstream 104069 16356241 ~ 16366191 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding upstream 114297 16352761 ~ 16355963 (+)
fis1 fis1,LOC108434607 coding upstream 120859 16343344 ~ 16349401 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding downstream 115213 16605696 ~ 16648129 (+)
cskmt mettl12 coding downstream 163338 16653821 ~ 16655884 (+)
krcp LOC108267668,LOC108434626 coding downstream 178974 16669457 ~ 16674227 (+)
mark2b mark2 coding downstream 184952 16675435 ~ 16715097 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding downstream 245584 16736067 ~ 16745357 (+)
G65495 NA non-coding upstream 27360 16431945 ~ 16442900 (+)
G65395 NA non-coding upstream 39574 16430461 ~ 16430686 (+)
G65382 NA non-coding upstream 77897 16392129 ~ 16392363 (+)
G65335 znf638 non-coding upstream 239145 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 406799 16062088 ~ 16063461 (+)
G65542 NA non-coding downstream 24154 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 79204 16569687 ~ 16577737 (+)
G65601 NA non-coding downstream 101964 16592447 ~ 16594457 (+)
G65643 NA non-coding downstream 186046 16676529 ~ 16677366 (+)
G65644 NA non-coding downstream 233412 16723895 ~ 16729352 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 99303 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 151094 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 430276 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1811324 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2200920 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 845014 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1119009 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1509675 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1622950 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1706829 18197312 ~ 18208564 (+)

Expression


Co-expression Network