ankrd33bb (LOC108268146)


Basic Information

Item Value
gene id ankrd33bb
gene name LOC108268146
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22538818 ~ 22544587 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936165.2
ATGGAAACCTCTATACACAGCACCAGTGAtgcagaggagaaagaggacTCTTGTTATgcagatgaggatgatgatgatgatgatgtgtacCTTGtcaaagatgatgatgatgatgatgatgatatctATCAGGAATTTGAGGAATTGGACTTCTTCCAGTTACCAGACAACAAAAGCATTGTGTCAGATGATTCCTTCTATCCAACTGACAATTCAGTCTCCTCTCAGAGATCCCCAACCCCTGAGGGTCCAGAGCCTCGCACTTTTTTCATGGCATGCTGCAGTAACAATGCCGTCATAGCCAAAATTATGATCAGGCAAGGAGTCAGTGAAGAGGAAGTTCGAGAAGTGGATAAAAACAACAGGACTGGTCTGATTGTGGCGTGTTATCAGGGCTATGTGGACATCGTCATTGCCCTCTCACAGTGTCCATATGTGGATGTGAACTGGCAAGACAGCGAGGGCAACACAGCTCTCATGACAGCTGCACAAGCAGGTCACATTATGATCACCAACTTTTTACTGAACTACTTTGCTGGGGTGGACATTGAACTCAGGAACTGTCACGGCTTCACGGCCATTATGAAAGCAGCCATGCAGGGCCGTGCCAACTGCGTCCGGGCCCTTATGATGTCAGGTGCGGACATTGAGGTGAGGGACTATGGGCGTAAGCTGACACCGCTCGAGTGGGCACTTTTCACAGGCCACTATGAGACAGCACGGATGATGCAGAGGCTTATGGCCCGACCATGTGCCGAGCAGTTCTGTGACTCATTCCGCATGGAGTGGCCCAAGTTGTCTCAACTGGTGTGCCAGACACAGGAGCCCCGACCATGCTGGAGGCAGCTGTCGGAGCGCATGTGTGGCACCTTCAACCTCAGAATGAGGATGGAGCCTCTGGAGGAGGGTGTGCTAGACTACATGGTGCGCCTGACCACAGCGCTGGCAAGTCCGCTTGTGGCCACTGCCTGCAGCACAGTATGCCCAGGCAGCCCACCATGTGTAGGCAAACATCGACCAGCTGTCCCAGATATCCTGCGGGACAATGACAAGCCGGTGGAGGATCTTAAGAGCCTGGAAAACTATAAGCGACTGTTCCAGAATGGTCGTATGCCACTGGTTTTCAAGGAACAGGAGCAGTGTGCCAGGCTGCAAGTGCCAACGCTGCCAGATGTGGTGTTGGCATCCAGCATGACATTGCGCAGAAacagcctgctgctgctgcccaTGATATGCAGGAGAAGCGTGTACCCAGGCCTGGTGGTGCCCAGAGTATGCCTGTGTAAGGCTCCACCACCAACCTACACACCCGAGAGGAACCAGTGCAGGAGCAAGGATCCACAGTACCTGCAGGTGCCCAAGTGGAAGTACAAGGCATTGAAAGAGGAGAAGGAGCAGGAAAAGCAAAACAACAAGCTGAGGTTTCCTATCGTGAAGAAGAGATGA

Function

NR:

description
PREDICTED: ankyrin repeat domain-containing protein 33B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936165.2 True 1446 mRNA 0.52 4 22538818 22544587

Neighbor

gene id symbol gene type direction distance location
march6 march6,LOC107686038,LOC107746911,LOC107732575,LOC107664076 coding upstream 13052 22504804 ~ 22525766 (+)
atpsckmt fam173b coding upstream 36957 22497558 ~ 22501861 (+)
LOC113539999 LOC108267232,LOC108440662 coding upstream 43708 22484285 ~ 22495110 (+)
kif9 kif9 coding upstream 156751 22367730 ~ 22382067 (+)
LOC117597114 NA coding upstream 174360 22363682 ~ 22364458 (+)
si:dkey-94e7.2 si:dkey-94e7.2,LOC108268141,LOC108440665,LOC107686084,LOC107586344 coding downstream 97155 22641742 ~ 22646438 (+)
tcea1 tcea1 coding downstream 125902 22670489 ~ 22677200 (+)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 158392 22702979 ~ 22737767 (+)
oprk1 oprk1,LOC108268135,LOC107664042,LOC107732559,LOC108440658,LOC107586336,LOC107558938 coding downstream 205278 22749865 ~ 22757329 (+)
chmp5a chmp5,LOC108440659,LOC107732555,LOC107586329,LOC107664100,LOC107558945,LOC107686086,LOC107746917 coding downstream 221676 22766263 ~ 22769071 (+)
G68999 NA non-coding upstream 11262 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 141717 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 151073 22383094 ~ 22387745 (+)
G68947 NA non-coding upstream 293993 22244588 ~ 22244825 (+)
G68687 NA non-coding upstream 621042 21914806 ~ 21917776 (+)
LOC113540593 NA non-coding downstream 382223 22926810 ~ 22938741 (+)
G69294 NA non-coding downstream 457411 23001998 ~ 23004102 (+)
G69443 NA non-coding downstream 739967 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 746823 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 786446 23331033 ~ 23331529 (+)
LOC113540377 NA other upstream 776517 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 898661 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1214851 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 1505065 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 2384041 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 105223 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 773917 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1483519 24028106 ~ 24106223 (+)
G69971 NA other downstream 1564208 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2314439 24859026 ~ 24871263 (+)

Expression


Co-expression Network